Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq15377 127 3e-24 seq513 127 3e-24 seq13988 125 1e-23 seq2291 100 4e-16 seq6568 84.2 3e-11 >seq15377 Length=116332 Score = 127 bits (140), Expect = 3e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | |||||||| || |||||||| || ||| | ||| | ||| || Sbjct 81070 ATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATCATCC 81129 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | |||| |||| | || || || || ||||| ||||||||||| || || || || Sbjct 81130 GACAGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAG 81189 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || ||||||||||| || | || | || ||| || || Sbjct 81190 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGGCGCTCGTTGTCAGACTACAAC 81249 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || |||||||| | ||| | || | ||| || |||||||||| ||| || Sbjct 81250 ATTCAGAAGGAATCAACGCTTCATCTAGTGCTTCGTCTAAGAGGTGGTATGCAAATTT 81307 >seq513 Length=239887 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || || || ||||||||||| || |||| ||||| | | Sbjct 208302 ATGCAGATTTTCGTCAAAACTCTTACTGGCAAAACTATTACGTTAGAAGTTGAATCTACC 208361 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||| ||| |||| | || || || || ||||| || ||||| || || || || ||| Sbjct 208362 GATATGATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAA 208421 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | |||||||| || || || |||||||| ||| |||| || | ||| || ||| Sbjct 208422 CAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGATGGTCGTACTCTTTCAGACTACAAT 208481 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || || ||||| ||| | |||||||| | ||| | || |||||| Sbjct 208482 ATCCAGAAGGAATCTACTCTTCATTTGGTACTTCGTCTTCGTGGTGGT 208529 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || |||||||| || |||| ||||| | | Sbjct 203108 ATGCAGATTTTCGTCAAGACTCTTACTGGTAAAACTATTACATTAGAAGTTGAATCTACC 203167 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||| ||| |||| | || || |||||||||||||| |||||||| || || || ||| Sbjct 203168 GATATGATTGATAATGTCAAGCAAAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAA 203227 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694 ||| | |||||||| || || || |||||||| ||| Sbjct 203228 CAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGAT 203263 >seq13988 Length=264055 Score = 125 bits (138), Expect = 1e-23 Identities = 395/613 (64%), Gaps = 32/613 (5%) Strand=Plus/Minus Query 205346 TTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTAACATATATATGTGCAT 205405 ||||| ||||| | ||||| || | ||| ||||||| || || | ||| | || Sbjct 240050 TTGGTTCCCGTTCAATTTGTTCCTTCAGGGCATCTATATGATCTACGTACACATGGGTAT 239991 Query 205406 TACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAG 205465 ||| || |||| || || || || | || | || | ||| ||||||||| || Sbjct 239990 CACCCATGGTATGTATGAACTCTCCAGGATCCAAGTCTGTGACATGAGCAATCATACGAG 239931 Query 205466 TCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTT 205525 |||||| |||||| |||| ||| ||||| || || | |||||||| ||||| | Sbjct 239930 TCAATAGGGCATAACTTGCAATATTGAATGGAACGCCCAGGCCCATATCGCAAGATCTCT 239871 Query 205526 GATACATTTGACATGTAAGATATTTATT---------------------ATTAATTACAT 205564 |||||| ||| | || |||| | || | |||| Sbjct 239870 GATACAAAACACAGGACAG---TTTAGCGCGGCTACCGTCAGCAGGAGGAGTACTGACAT 239814 Query 205565 GAAATTGTACA-AAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTC 205623 |||||| ||| ||| ||||||||| |||| | |||| | | ||| ||||||| Sbjct 239813 AAAATTG-ACAGAAAGCATGACAAGGCGGTAAAGCCATGCTGGGGATGTCTGCAGGATTC 239755 Query 205624 CAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGT 205683 || || | || || ||| | | || ||||| || || || | || || | | Sbjct 239754 CAAGCGCTCAAAATGATACGGCGATCGGTGGGATTATTCTTGATCTTTTCAATTATCTCT 239695 Query 205684 GTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCA 205743 | |||||||| ||||| |||||| | ||| || ||||| |||||| ||||| Sbjct 239694 TGCAGTTGATCAACGCCTTGCCCTGTATAGTCTGTGTCGCAATCAACATATTTGGCACCG 239635 Query 205744 AAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAA 205803 || || ||||||||||||||||| ||||| || |||||||||||||| | || | ||| Sbjct 239634 AAGTGGCGCCATTGAAAACCATACACTGGCCCCAAATCACCTTCTTTGCGATGTGTCAAA 239575 Query 205804 CCACGtttttttatatattttaatgatccattttcatcccaaatatggattcctttattt 205863 ||| | || | | |||| || ||||| ||||||| || | || | ||| | Sbjct 239574 CCAAGCTTATCCAGGTATTCGCGGGAGCCATTGCCATCCCAGATTTTGA---CATTACGT 239518 Query 205864 t---ttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATT 205920 | ||| | || | |||||| |||| | |||||| | |||||| || || | Sbjct 239517 TCGCTTAAATGCTTGGAATTAGTATCTCCACGAACAAACCACAGTAATTCCTCGACTACA 239458 Query 205921 CCTCTCCAAAACA 205933 ||||| ||||| Sbjct 239457 CCTCTGTGAAACA 239445 >seq2291 Length=180 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | |||||||| || |||||||| || ||| | ||| | ||| || Sbjct 2 ATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATCATCC 61 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | |||| |||| | || || || || ||||| ||||||||||| || || || || Sbjct 62 GACAGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAG 121 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGA 124693 ||| | | || ||||| || ||||||||||| || Sbjct 122 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGA 156 >seq6568 Length=250849 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 |||||| || |||||||||||| | || ||||| || || || ||| | || ||| | || Sbjct 220609 AGGTATCCCTCCTGATCAACAACGTCTCATTTTCGCTGGTAAGCAACTTGAAGATGGCCG 220668 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 || || ||||| ||||| ||||| ||||| ||| | || ||||| | ||| | || Sbjct 220669 TACTTTGAGTGATTACAATATCCAAAAGGAATCTACTCTTCACTTGGTCCTCCGTCTTCG 220728 Query 124760 AGGTGGTAT 124768 |||||||| Sbjct 220729 TGGTGGTAT 220737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755308336681600