Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3986 95.1 1e-14 seq15377 93.3 5e-14 seq8594 93.3 5e-14 seq513 91.5 2e-13 >seq3986 Length=322 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/81 (86%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| ||| |||||| |||||| ||||||||||||||||||||| |||| Sbjct 139 AAAAAATCTCTCC--GGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 82 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||||||| || Sbjct 81 TTACCACTATACTACCGAAGA 61 >seq15377 Length=116332 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||| ||| | ||| | ||| | || ||||| ||||| ||||| || | | Sbjct 81296 CCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCTGAC 81237 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | | ||| |||| |||| || ||||| || || || | || |||||||| | || Sbjct 81236 AACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGA 81177 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | || ||||| ||| ||||| |||| | | | ||||| ||||| || Sbjct 81176 ATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACC 81117 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || | |||||||||||||| || || ||||| || || |||||||| ||| Sbjct 81116 TCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATATTT 81066 >seq8594 Length=211578 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| ||| |||| |||||| |||||| ||||||||||||||||||||| |||| Sbjct 211176 AAAAATAAACTCTCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 211235 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||||||| || Sbjct 211236 TTACCACTATACTACCGAAGA 211256 >seq513 Length=239887 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| || || || ||||| || | || |||| ||||| || ||||| Sbjct 208264 TCCTTTTGAATGTTATAGTCTAAAAGAGTACGACCATCTTCTAATTGCTTGCCGGCGAAA 208205 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || || || ||||| | || | | |||||||| ||| ||||| |||| | Sbjct 208204 ATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGGATCTTTTGCTTGACATTA 208145 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||| || | ||||| || || | || ||||| ||||| || || ||||| || Sbjct 208144 TCAATCGTATCAGTGGATTCAACTTCTAATGTAATGGTCTTGCCAGTAAGAGTCTTAACG 208085 Query 43173 AAGATTTGCATTTTT 43187 ||||||||||| ||| Sbjct 208084 AAGATTTGCATATTT 208070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571705831102360