Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq513 125 5e-24 seq15377 82.4 5e-11 >seq513 Length=239887 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| || | |||| ||| ||||| || |||||||| || || ||| | || Sbjct 208513 AGTACCAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGAAAGAGTACGACCATCT 208454 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || || |||||||| |||||||| || || || ||||| ||| | || |||||||| Sbjct 208453 TCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 208394 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||| | || | ||| |||||| ||||| || || | ||| || ||| Sbjct 208393 TGGATCTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAACGTAATAGTT 208334 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || |||||||| || || |||||||| Sbjct 208333 TTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 208302 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | |||| ||| || || ||||| ||||| | || ||| | || Sbjct 208285 AGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAAAGAGTACGACCATCT 208226 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || || |||||||| |||||||| || || || ||||| ||| | | |||||||| Sbjct 208225 TCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCT 208166 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||| | || | |||| ||| || ||||| || || | || ||||| Sbjct 208165 TGGATCTTTTGCTTGACATTATCAATCGTATCAGTGGATTCAACTTCTAATGTAATGGTC 208106 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || ||||| || || ||||| ||||| Sbjct 208105 TTGCCAGTAAGAGTCTTAACGAAGATTTGCAT 208074 >seq15377 Length=116332 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/196 (69%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| |||| | || |||| || || || || || || || Sbjct 81261 TTCCTTCTGAATGTTGTAGTCTGACAACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAA 81202 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | || |||||||| || | | || ||||| ||||||||||| | || Sbjct 81201 GATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGGATCTTTTGCTTGACAT- 81143 Query 34318 GGCTATCGAATCGGTCG----ATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTT 34373 |||| | || |||| |||| || |||| |||||||||||||| || || || | Sbjct 81142 ---TATCAATTCTGTCGGATGATTCTACCTCCAAAGTGATGGTTTTGCCAGTAAGTGTCT 81086 Query 34374 TCACAAAGATCTGCAT 34389 | || || || ||||| Sbjct 81085 TGACGAAAATTTGCAT 81070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323010430250720