Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq14752 187 2e-42 seq11881 152 5e-32 >seq14752 Length=160396 Score = 187 bits (206), Expect = 2e-42 Identities = 570/868 (66%), Gaps = 26/868 (3%) Strand=Plus/Minus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||| || ||| ||| | |||||||||||| ||||| ||||||| | ||||| || Sbjct 135998 TTGGTAATCAGAAACACGCTTTTCAAAGAAGTTTGTCTTTCCTTGAAGGGAAATCAAATC 135939 Query 16006 CATAAAATCAAAAGGATTTTTTGAACA--ATAGTATTTATCGCATCCCAATTCCAACAAT 16063 |||||||||||| ||||| |||| ||||| || | | || || ||| || Sbjct 135938 CATAAAATCAAAGGGATTAGA--AACATTATAGTGCTTGGGGAAACC-AAGAGAAACCAT 135882 Query 16064 AAT-CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 | | ||| || |||||||| | ||||| ||||| ||| ||||| || || || Sbjct 135881 CAGACGATCAGCAACAAATTCGACGTACTGACACATTAGTTCATCATTCATACCGATCAA 135822 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 | |||| || | ||||||| | |||||| ||| ||||| | || || || | | | Sbjct 135821 TCTAACGGGCAATGCTTCTTTGAAAAAACTTTGCTCTATCTCGACGGCCTCCGTCA--AA 135764 Query 16183 ATCTCTTACTACACTATTTAACGGAGGGTTTAATAA----GTGTTTAAACATTATACAAG 16238 |||| | ||| | || | ||| |||| | ||| ||| | || | | ||| Sbjct 135763 ATCTGA-AGAACAGT-TTCATGGGAAGGTTGATTAATCATGTGGTGGAATAAAAGACAGC 135706 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 |||||||| ||| | ||||| || | | | || ||||| || || | || | ||| | Sbjct 135705 CAAAATCAGCATGAAGACCTTCATCACGAGTAATGAACTCATTGGAGAGAGTCAAACCAG 135646 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 |||||| || || ||||| | |||||| |||| |||||| || || |||||||| | || Sbjct 135645 GCATTAAACCACGCTTTTTGAGCCAAAAGATAGAGGCAAACGAGCCTGAAAAGAAGACAC 135586 Query 16359 CTTCAACTGCGGCAAATGCA-----ACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 |||| | ||||| ||| || | || | || ||| ||| | | | Sbjct 135585 CTTCGATAATAGCAAAGGCACAGATACGTACGGCGAAAGGTTGGTTGGATTCGT--TGGC 135528 Query 16414 tatccattttttagcccaatttgctttt-tgtttAACACAGTTCATGTTCTCTATTGCAT 16472 |||||||| |||||||| || || | || | || || ||||||| |||| Sbjct 135527 GATCCATTTGAAAGCCCAATCAGCCTTGGTCTTGATTTGAGGA-ATAGTCTCTATGGCAT 135469 Query 16473 TAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACA 16532 |||| ||| | | ||||| | ||| ||||| ||||| || | || |||| Sbjct 135468 TAAACAAAAATTCCTTTTCAACGGGATCCTTGATATACGTATCGATCAATAGGGAGTACA 135409 Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592 |||| || ||||| ||||| || ||||||||||| ||||| ||| |||| ||| || Sbjct 135408 TTTCAGAGTGAATGTTCTCAATCATGATCTGAAAACCGTAAAAACATTTAGCCTCGCCTA 135349 Query 16593 TTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 | | |||||| | |||| || | |||| ||||| || || || ||||| || || Sbjct 135348 TCTTAACTTCATCGCAAAAGTTTGCAACTAAATTTTCATTGACGATGCCATCCGAAGTTG 135289 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTT---AACC 16709 ||||||| || | || | || || | ||| | | || ||| || Sbjct 135288 CAAAAAAAGCTAATACACGGCCGATGAAGTGGCGTTCATCCTTGTTCAGCTTTTCCTCCC 135229 Query 16710 AGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 | ||| | ||||| |||||||| |||||||| |||||||| || ||||| | || | Sbjct 135228 AATCAAGTATGTCTTTGGATAAATCAACCTCTTCCACAGTCCAGAACGAAGCTTCGGCTT 135169 Query 16770 TTTTATACATTTTCCATATGTCTTCGTA 16797 | || || | | ||| || || | ||| Sbjct 135168 TCTTGTAAAACTCCCAAATTTCATGGTA 135141 Score = 165 bits (182), Expect = 8e-36 Identities = 595/918 (65%), Gaps = 26/918 (3%) Strand=Plus/Minus Query 15887 TAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACT--GACATTT 15944 || ||||| |||| | |||||| | |||| |||| | |||||||| | || | Sbjct 138127 TAGAAATCCGTATCCAAAGAAAAGTTACGGTCTTCTTTACTAGACATAACACCGGCACGT 138068 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | |||| ||| ||| | ||||||||| || || |||||||||| || ||||| | Sbjct 138067 T--GATAATCAGAAACACGCTTTTCAAAAAAGTTAGTTTTTCCTTGCAAAGAAATCAGCT 138010 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTA---TTTATCGCATCCCAATTCCAACA 16061 ||||||||||||| || ||| || || ||| |||| | | || | | || Sbjct 138009 CCATAAAATCAAAGGGGTTT---GAGACATTGTAATTTTTAGGGAAACCAAGAGATACCA 137953 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 | | | || || |||||| | || || ||| || | |||||| || |||| Sbjct 137952 AGAGACGGTCGGCAACAAATCTAACGTATTGGCACATCAACTTGTCGTTCATACCAATTA 137893 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAttttt-ttCTATATTAACCGCTTCAATGATT 16180 | ||||| | | || ||||| || | ||| || | |||||| ||| |||| Sbjct 137892 AACGCACAGGAAGAGAATCA-TTAAAGTATGACTCTTCGATCTCAACCGCCTCAGTGATA 137834 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGT--TTAAT-AAGTGTTTAAACATTATACAA 16237 || | | ||| | | | ||| | | ||| || || | ||||| | || Sbjct 137833 ATTTGA---AGAACAGTTTCATGTGAAGGCTGATCAATCAAATGATGAAACAAGAGGCAT 137777 Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297 |||||||| ||| | ||||| || | | | || || || || |||| || | ||| Sbjct 137776 CCAAAATCAGCATGTAGGCCTTCATCACGAGTAATGAATTCATTAGAAAGAGTCAAACCA 137717 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 ||||||| || || || || | |||||| |||| |||||| || ||||||||||| ||| Sbjct 137716 GGCATTAAACCACGCTTCTTGAGCCAAAAGATAGAGGCAAACGATCCAGAAAAGAAGATA 137657 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtt---tttactttct 16414 || || || || ||||| ||||| | || |||| | | | || || | | Sbjct 137656 CCCTCCACAGCAGCAAAAGCAACAATACGGACACCAAAAGGTTGGTTTGATTCATTAGAG 137597 Query 16415 atccattttttagcccaatttgctttttgtttAA-CACAGTTCATGTTCTCTATTGCATT 16473 |||||||| |||||| || || || | |||| |||| ||| | || || ||||| Sbjct 137596 ATCCATTTGAAAGCCCAGTTAGCCTTATCCTTAATGACAG-GAATGGTTTCGATGGCATT 137538 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 |||||| | | ||| || | |||| ||| |||||||| || | || ||||| Sbjct 137537 AAATAAGAATTCTTTCTCAATAGAATCTTTAATGTAAGTATCGATCAATAGCGAGTACAT 137478 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 ||| || ||||| ||||| || ||||||||||| || ||||| | || |||| || Sbjct 137477 TTCAGAGTGAATGTTCTCAATCATGATCTGAAAACCGTAGAAGCACTTTGCCTCGGCTAC 137418 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 | |||||| | | || ||| | | || || || || || ||||| || || Sbjct 137417 CTTGACTTCATCGCAGAAGTTTTTCACCAGATTCTCATTGACAATACCATCAGAAGTAGC 137358 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTT---AACCA 16710 ||| || || | | | |||||| | | || | ||| |||||| ||| Sbjct 137357 AAAGAAGGCCAACACACGAGAAATAAAGAATCTCTCATCATCATTTAGTTTTTCCTCCCA 137298 Query 16711 GTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTT 16770 |||| || || ||||| | ||| || || || | ||||| ||||| || |||| || Sbjct 137297 GTCAATCAAGTCCTTTGACAGATCAACTTCCTCGGCTGTCCAGAAAGAGGCTTCAGCTTT 137238 Query 16771 TTTATACATTTTCCATAT 16788 |||||| | || ||| || Sbjct 137237 TTTATAGAATTCCCAAAT 137220 >seq11881 Length=132943 Score = 152 bits (168), Expect = 5e-32 Identities = 548/850 (64%), Gaps = 14/850 (2%) Strand=Plus/Plus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 |||||| ||| || | || ||||||||||| || ||||||| | ||||| | || Sbjct 44545 TTGATAGTCAGAGACACGTTTCTCAAAGAAATTGGTCTTTCCTTGAAGCGAAATCATGTC 44604 Query 16006 CATAAAATCAAAAGGATTTTTTGAACAATAGTA---TTTATCGCATCCCAATTCCAACAA 16062 ||| |||||||| || || || || ||| ||||||| | || | | | || Sbjct 44605 CATGAAATCAAAGGG---GTTAGAGGCATTGTAAATTTTATCGAAGCCGAGGGCGACCAT 44661 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 | ||| || || |||||||| || || || ||| | | |||||| || || | Sbjct 44662 GAGTCTGTCAGCAACAAATTCAATGTATTGGCACATGAGGTTGGCGTTCATGCCAATAAG 44721 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 |||||||| | || || || || || | || || || | ||| || || ||| || Sbjct 44722 ATTAACAGGCAAAGCGTCAGTCAAGAATTCTTGCTCAATTTCAACAGCCTCTGCGATGAT 44781 Query 16183 ATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG-TGTTTAAACATTATACAAGCAA 16241 ||||| || || || || || ||| | || || |||||| | ||| |||| Sbjct 44782 -GCTCTTTACACGCTCTTGGGAGGGGGTTTTCTTCAGATGGGTAAACAAGAGACAGGCAA 44840 Query 16242 AATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCA 16301 | || ||| | || ||||| | | || || || || ||||| || | || |||| Sbjct 44841 AGTCGGTATGAAGGCCCTCGTCACGAGAGATCAATTCATTAGAAAAGGTCAACCCAGGCA 44900 Query 16302 TTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTT 16361 | || || || || || | ||| || || | ||||||||| || || ||||| ||||||| Sbjct 44901 TGAGGCCGCGCTTCTTGAGCCAGAAAATGGAGGCAAATGAGCCTGAGAAGAAGATACCTT 44960 Query 16362 CAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccatt 16421 | || || ||||| ||||| |||| ||| | | | || || | ||||||| Sbjct 44961 CGACGGCAGCAAAAGCAACTAATCTTTCAGCAAAAG---AATCATTGCCAGAGATCCATT 45017 Query 16422 ttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAAT 16481 | ||||| | || ||| || | |||| ||| | || || || | ||| | Sbjct 45018 TGAAGGCCCAGTCAGCCTTTCTCTTGATACAGGGGATGGTTTCAATGGCGTCAAAGAGCA 45077 Query 16482 AAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAAT 16541 | ||||| |||||| |||||||| || || | | ||| || | || | || Sbjct 45078 TCTCCTTTTCAGCGCTATCCTTGATATAAGTGTCAATCAAAAGACTGTATGTCTCAGCAT 45137 Query 16542 GAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTT 16601 |||| || || || || || || |||||||| || ||| | ||||| | || | |||| Sbjct 45138 GAATGTTTTCAATGGCGATTTGGAAACCATAGAAACATTTGGCTTCAGGAATCTTGACTT 45197 Query 16602 CAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACG 16661 || |||| ||| | | ||||||||| || | ||||| | ||||| |||| Sbjct 45198 CATCACAAAAGTTTTGCACCAGGTTTTCGTTTACAACACCATCAGCACTAGCAAAGAACG 45257 Query 16662 CAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGTT--TTAACCAGTCAGAAA 16718 | | | | ||||| | | ||||||| || | | || || ||| ||| Sbjct 45258 CCAACACACGAGAGATAAAGTATCTTTCGTTTTCATTCATCTTGGTTTCCCAATCATGTT 45317 Query 16719 AATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACA 16778 ||| || || || |||| || ||| ||||||| ||||| || |||| || || || | Sbjct 45318 GATCCTTAGACAAGTCGATTTCCTCTGCAGTCCAGAAAGAGGCTTCAGCTTTCTTGTAGA 45377 Query 16779 TTTTCCATAT 16788 || ||| || Sbjct 45378 ATTGCCAGAT 45387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462421596248200