Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq13988 163 2e-35 >seq13988 Length=264055 Score = 163 bits (180), Expect = 2e-35 Identities = 395/599 (66%), Gaps = 22/599 (4%) Strand=Plus/Plus Query 20200 TTTGACA-ACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTT 20258 ||||||| | || |||| || |||||||| || |||||||| ||||||||| | || || Sbjct 239575 TTTGACACATCGCAAAGAAGGTGATTTGGGGCCAGTGTATGGTTTTCAATGGCGCCACTT 239634 Query 20259 TGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACA 20318 || || |||||||||| ||||| | ||| || ||||| || |||||| | || Sbjct 239635 CGGTGCCAAATATGTTGATTGCGACACAGACTATACAGGGCAAGGCGTTGATCAACTGCA 239694 Query 20319 AAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTG 20378 | | | ||| | || || | || || | ||| | | || ||||| |||| || Sbjct 239695 AGAGATAATTGAAAAGATCAAGAATAATCCCACCGATCGCCGTATCATTTTGAGCGCTTG 239754 Query 20379 GAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTA 20438 ||| || ||| | || |||||||| || || |||||| | || |||||||| Sbjct 239755 GAATCCTGCAGACATCCCCAGCATGGCTTTACCGCCTTGTCATGCTTTCTGTCAATTTTA 239814 Query 20439 CGT------------TGCTAA---TAA------TGAATTGTCGTGTCAAATGTATCAACG 20477 || |||| | || | || |||| ||| ||||||| | Sbjct 239815 TGTCAGTACTCCTCCTGCTGACGGTAGCCGCGCTAAACTGTCCTGTGTTTTGTATCAGAG 239874 Query 20478 ATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTA 20537 ||| |||||||| ||||| ||||| |||||||||||||||||||| || | || Sbjct 239875 ATCTTGCGATATGGGCCTGGGCGTTCCATTCAATATTGCAAGTTATGCCCTATTGACTCG 239934 Query 20538 TATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGC 20597 ||||||||| ||||| ||||| || | | || || || | || ||||| || || | Sbjct 239935 TATGATTGCTCATGTCACAGACTTGGATCCTGGAGAGTTCATACATACCATGGGTGATAC 239994 Query 20598 GCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGACAACCAAAACA 20657 ||| | ||| | |||||||||| | | || ||| | ||| |||||| | | Sbjct 239995 CCATGTGTACGTAGATCATATAGATGCCCTGAAGGAACAAATTGAACGGGAACCAAGAAA 240054 Query 20658 ATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATTAACGATTTTAAAGCTGATGA 20717 || || || || ||| ||| | | | ||| | ||||||| || ||| || Sbjct 240055 TTTTCCTACACTAAAGTTTAATCGCAAGATCACTAGCATTGATGATTTTACAGTTGAAGA 240114 Query 20718 TTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCCAATGGAAATGTCTGTTTAAT 20776 |||| | || ||||| || ||||| ||| | | || ||| ||||||||||||||| Sbjct 240115 TTTTATATTTGAAGGCTACAATCCTCATGGTAAACTTGACATGAAAATGTCTGTTTAAT 240173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399107925134965