Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq14752 232 6e-56 seq11881 140 3e-28 >seq14752 Length=160396 Score = 232 bits (256), Expect = 6e-56 Identities = 614/923 (67%), Gaps = 16/923 (2%) Strand=Plus/Minus Query 13846 CAATAAAAACTAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAAC 13905 || |||| ||| ||||| ||| || ||||| | || ||||| |||| ||||| Sbjct 138137 CATTAAAGCCTAGAAATCCGTATCCAAAGAAAAGTTACGGTCTTCTTTACTAGACATAAC 138078 Query 13906 GCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGA 13965 || |||||| ||| ||| | |||||||| ||||||||||| |||| || || Sbjct 138077 ACCGGCACGTTGATAATCAGAAACACGCTTTTCAAAAAAGTTAGTTTTTCCTTGCAAAGA 138018 Query 13966 TATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTT-ATCACAACCTAGTT 14024 || |||||||||||||| || |||| ||||| | ||| | |||| || Sbjct 138017 AATCAGCTCCATAAAATCAAAGGGGTTTGA-GACATTGTAATTTTTAGGGAAACCAAGAG 137959 Query 14025 CTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATAC 14084 || | | | || |||| || || ||||| |||| || | ||||||| Sbjct 137958 ATACCAAGAGACGGTCGGCAACAAATCTAACGTATTGGCACATCAACTTGTCGTTCATAC 137899 Query 14085 CTATTAGTTTTACAGGAATTATATTGGTTAAAA-ATTCTTTTTCTATAGACACAGCCTCG 14143 | |||| ||||||| | | | ||||| || | ||| || || ||||| Sbjct 137898 CAATTAAACGCACAGGAAG-AGAATCATTAAAGTATGACTCTTCGATCTCAACCGCCTCA 137840 Query 14144 TTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAA 14203 | ||||| || | |||||| ||||| ||| | | ||| | ||| | | Sbjct 137839 GTGATAATTTGAAGAACAGTTTCATGTGAAGGCTGATCAATCAAATGATGAAACAAGAGG 137780 Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || |||||||| ||| ||||| ||||| | | |||| | ||| || |||| || || Sbjct 137779 CATCCAAAATCAGCATGTAGGCCTTCATCACGAGTAATGAATTCATTAGAAAGAGTCAAA 137720 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||| || || || || || | |||||| || | || || ||||| |||||||| Sbjct 137719 CCAGGCATTAAACCACGCTTCTTGAGCCAAAAGATAGAGGCAAACGATCCAGAAAAGAAG 137660 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGAT-GCTTT--TTTGTTC 14380 || ||||| || |||||||| || | | || | ||||| | | | ||| || || Sbjct 137659 ATACCCTCCACAGCAGCAAAAGCAACAATACGGACACCAAAAGGTTGGTTTGATTCATTA 137600 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 || |||||||| |||||| | || || | ||||| | | || ||||| || ||| Sbjct 137599 GAGATCCATTTGAAAGCCCAGTTAGCCTTATCCTTAATGACAGGAATGGTTTCGATGGCA 137540 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TA 14499 |||||||| ||| ||||| ||| | | |||||| ||||| || | || || | || Sbjct 137539 TTAAATAAGAATTCTTTCTCAATAGAATCTTTAATGTAAGTATCGATCAATA-GCGAGTA 137481 Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG- 14558 |||||||||||| ||||| || || ||||||||||| || || || | || || | Sbjct 137480 CATTTCAGAGTGAATGTTCTCAATCATGATCTGAAAACCGTAGAAGCACTTTGCCTCGGC 137421 Query 14559 -ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617 ||| ||| || || | | || ||| ||| ||| ||||| || ||||||||| | Sbjct 137420 TACC-TTG-ACTTCATCGCAGAAGTTTTTCACCAGATTCTCATTGACAATACCATCAGAA 137363 Query 14618 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTT--- 14674 | ||||| || ||||| | ||||||| || ||| |||| | |||||| Sbjct 137362 GTAGCAAAGAAGGCCAACACACGAGAAATAAAGAATCTCTCATCATCATTTAGTTTTTCC 137303 Query 14675 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACA 14734 | ||| || || ||||| || ||||| ||||| || ||||||| ||| || || Sbjct 137302 TCCCAGTCAATCAAGTCCTTTGACAGATCAACTTCCTCGGCTGTCCAGAAAGAGGCTTCA 137243 Query 14735 GCTTTTTTATACATTACCCATAT 14757 ||||||||||| | | |||| || Sbjct 137242 GCTTTTTTATAGAATTCCCAAAT 137220 Score = 149 bits (164), Expect = 6e-31 Identities = 567/877 (65%), Gaps = 16/877 (2%) Strand=Plus/Minus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||| || ||| ||| | |||||||||||||| || || |||| || || || || Sbjct 135998 TTGGTAATCAGAAACACGCTTTTCAAAGAAGTTTGTCTTTCCTTGAAGGGAAATCAAATC 135939 Query 13975 CATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGTA 14033 |||||||||||| ||||| | |||| | | || |||| || | | | Sbjct 135938 CATAAAATCAAAGGGATTAGAA-ACATTATAGTGCTTGGGGAAACCAAGAGAAACCATCA 135880 Query 14034 ATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 14093 | ||| |||| || || | || ||| |||||| ||| ||||||||| || | | Sbjct 135879 GACGATCAGCAACAAATTCGACGTACTGACACATTAGTTCATCATTCATACCGATCAATC 135820 Query 14094 TTACAGGAATTATATTGGTTAAAAATTCTTTT-TCTATAGACACAGCCTCGTTTATAATA 14152 | || || | | || || |||| |||| ||||| || ||||| | | ||| Sbjct 135819 TAACGGGCAATGC-TTCTTTGAAAAAACTTTGCTCTATCTCGACGGCCTCCGTCAAAATC 135761 Query 14153 ATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 14212 || | |||||| ||||| ||| | | || | || | | ||| ||||| Sbjct 135760 TGAAGAACAGTTTCATGGGAAGGTTGATTAATCATGTGGTGGAATAAAAGACAGCCAAAA 135701 Query 14213 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 14272 ||| |||||| || ||||| | | |||| | || || || | || || || ||||| Sbjct 135700 TCAGCATGAAGACCTTCATCACGAGTAATGAACTCATTGGAGAGAGTCAAACCAGGCATT 135641 Query 14273 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 14332 || || || ||||| | |||||| || | || || || || |||||||| | || || Sbjct 135640 AAACCACGCTTTTTGAGCCAAAAGATAGAGGCAAACGAGCCTGAAAAGAAGACACCTTCG 135581 Query 14333 ACTGCAGCAAACGCTATTAATCGTTCTCC-AAACGATGCTTT--TTTGTTCGATATCCAT 14389 | |||||| || | ||| | | ||| | || || || ||| | |||||| Sbjct 135580 ATAATAGCAAAGGCACAGATACGTACGGCGAAAGGTTGGTTGGATTCGTTGGCGATCCAT 135521 Query 14390 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14449 || |||||| |||| || | || || | || || || || |||||||| ||| Sbjct 135520 TTGAAAGCCCAATCAGCCTTGGTCTTGATTTGAGGAATAGTCTCTATGGCATTAAACAAA 135461 Query 14450 TGTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14507 |||||| || | | ||||| || | ||||| || | || | |||||||||| Sbjct 135460 AATTCCTTTTCAACGGGATCCTTGATAT--ACGTATCGATCAATAGGGAGTACATTTCAG 135403 Query 14508 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT-TGT 14566 |||| ||||| || || ||||||||||| ||||||||| |||| || | | || | Sbjct 135402 AGTGAATGTTCTCAATCATGATCTGAAAACCGTAAAAACATTTAGCCTC-GCCTATCTTA 135344 Query 14567 ACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14626 || || | |||| || | | ||||||||||| || || ||||| || ||||||| Sbjct 135343 ACTTCATCGCAAAAGTTTGCAACTAAATTTTCATTGACGATGCCATCCGAAGTTGCAAAA 135284 Query 14627 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTT---TTCCAATCG 14683 || || |||| || |||| | || || ||| | || ||| | |||||| Sbjct 135283 AAAGCTAATACACGGCCGATGAAGTGGCGTTCATCCTTGTTCAGCTTTTCCTCCCAATCA 135224 Query 14684 GCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTA 14743 || || || || | ||| || || || || ||||| || ||| | ||||| || Sbjct 135223 AGTATGTCTTTGGATAAATCAACCTCTTCCACAGTCCAGAACGAAGCTTCGGCTTTCTTG 135164 Query 14744 TACATTACCCATATTTCTTTATATAATATAGGAAAAA 14780 || | |||| ||||| | ||| ||||| |||| Sbjct 135163 TAAAACTCCCAAATTTCATGGTATTTGATAGGGAAAA 135127 >seq11881 Length=132943 Score = 140 bits (154), Expect = 3e-28 Identities = 539/838 (64%), Gaps = 14/838 (2%) Strand=Plus/Plus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||| ||| || | ||| |||||||| || || || |||| || || || | || Sbjct 44545 TTGATAGTCAGAGACACGTTTCTCAAAGAAATTGGTCTTTCCTTGAAGCGAAATCATGTC 44604 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 ||| |||||||| || || | | | | | |||||| | || || | | | | Sbjct 44605 CATGAAATCAAAGGGGTTAGAGGCATTGTAAATTTTATCGAAGCCGAGGGCGACCATGAG 44664 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 ||| || |||| || ||||| ||||| |||| | | ||||| || || || || Sbjct 44665 TCTGTCAGCAACAAATTCAATGTATTGGCACATGAGGTTGGCGTTCATGCCAATAAGATT 44724 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 ||||| | | || || ||||||| || || |||||||| || || | Sbjct 44725 AACAGGCAAAGCGTCAGTCAAGAATTCTTGCTCAATTTCAACAGCCTCTGCGATGATGCT 44784 Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTT-AGATGTTTAAAAATTAAACACGCAAAAT 14213 | | | | || || | ||| || | | || ||||| |||| | | ||| ||||| | Sbjct 44785 CTTTACACGCTC-TTGGGAGGGGGTTTTCTTCAGATGGGTAAACAAGAGACAGGCAAAGT 44843 Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273 | |||||||||||| || | | || | ||| || ||||| || || || ||||| | Sbjct 44844 CGGTATGAAGGCCCTCGTCACGAGAGATCAATTCATTAGAAAAGGTCAACCCAGGCATGA 44903 Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333 || || || || | ||| || || | || ||||| || || ||||| || || || | Sbjct 44904 GGCCGCGCTTCTTGAGCCAGAAAATGGAGGCAAATGAGCCTGAGAAGAAGATACCTTCGA 44963 Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14393 | |||||||| || | ||||| ||| |||| || | ||| || |||||||| Sbjct 44964 CGGCAGCAAAAGCAACTAATCTTTCAGCAAAAGA---ATCATTGCCAGAGATCCATTTGA 45020 Query 14394 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT 14453 ||||| |||| ||| | || ||| | || |||||||| || | ||| | | Sbjct 45021 AGGCCCAGTCAGCCTTTCTCTTGATACAGGGGATGGTTTCAATGGCGTCAAAGAGCATCT 45080 Query 14454 CCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511 |||| || || |||| || || || ||||| | | || || | |||| || Sbjct 45081 CCTTTTCAGCGCTATCCTTG--ATATAAGTGTCAATCAAAAGACTGTATGTCTCAGCATG 45138 Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC-TGACCATTGTACCT 14570 |||||||| || || || || |||||||| |||||| | ||||| || ||| || | Sbjct 45139 AATGTTTTCAATGGCGATTTGGAAACCATAGAAACATTTGGCTTCAGGAATCTTG-ACTT 45197 Query 14571 CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14630 | |||| ||| ||| ||||| || || | ||||||| | ||||| || | Sbjct 45198 CATCACAAAAGTTTTGCACCAGGTTTTCGTTTACAACACCATCAGCACTAGCAAAGAACG 45257 Query 14631 CCAATATGTTTTTAATAAAGTA---TTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTA 14687 |||| | |||||||| || | |||||| | ||| |||||| | Sbjct 45258 CCAACACACGAGAGATAAAGTATCTTTCGTTTTCATTCATCTTGGTTTCCCAATCATGTT 45317 Query 14688 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745 ||||||||| | || | ||| || | ||||| ||| || ||||||| || || Sbjct 45318 GATCCTTAGACAAGTCGATTTCCTCTGCAGTCCAGAAAGAGGCTTCAGCTTTCTTGTA 45375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482251319523160