Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq11881 147 4e-30 seq14752 132 1e-25 seq802 104 5e-17 >seq11881 Length=132943 Score = 147 bits (162), Expect = 4e-30 Identities = 350/522 (67%), Gaps = 13/522 (2%) Strand=Plus/Minus Query 101844 TCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGATT 101903 ||||| ||||||| |||| | ||||| | || ||||| ||||| | || Sbjct 45053 TCCCCTGTATCAAGAGAAAGGCTGACTGGGCCTTCAAATGGATCTCTGGCAATGATTCTT 44994 Query 101904 TGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCG 101963 | || ||| | | ||||| |||||||| || ||||| |||||||| || |||| | Sbjct 44993 TTGCTGAAAGATTAGTTGCTTTTGCTGCCGTCGAAGGTATCTTCTTCTCAGGCTCATTTG 44934 Query 101964 CATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGT 102023 | |||||||||||| ||||||| | || | ||||||| | |||| || ||||| | Sbjct 44933 CCTCCATTTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGGTTGACCTTTTCTAATGAAT 44874 Query 102024 TCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTT 102083 | || ||| | ||||| || |||||| ||||||||| || | |||| | | | Sbjct 44873 TGATCTCTCGTGACGAGGGCCTTCATACCGACTTTGCCTGTCTCTTGTTTACCCA----T 44818 Query 102084 TTGTTG-ATACCCCAT--CAAGAGAAAGGATTCTTGA-AATTGTCACTGAAGCCGTCCGA 102139 || | | ||||| | |||||| | | || || || | || || || | Sbjct 44817 CTGAAGAAAACCCCCTCCCAAGAG---CGTGTAAAGAGCATCATCGCAGAGGCTGTTGAA 44761 Query 102140 ATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAG 102199 ||||| |||||||| | || | | |||||||||| | | || |||||| ||| Sbjct 44760 ATTGAGCAAGAATTCTTGACTGACGCTTTGCCTGTTAATCTTATTGGCATGAACGCCAAC 44701 Query 102200 TTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAA 102259 | ||| |||| |||||||||||||| || || | ||| |||| | | || | || Sbjct 44700 CTCATGTGCCAATACATTGAATTTGTTGCTGACAGACTCATGGTCGCCCTCGGCTTCGAT 44641 Query 102260 AAGCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTC-CCTCGAGAATAA 102318 || || |||| | |||||||| |||||||||| ||||| | || || | || Sbjct 44640 AAAATTTACAATGCCTCTAACCCCTTTGATTTCATGGACATGATTTCGCTTCAAGGA-AA 44582 Query 102319 GACCAACTTTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGC 102360 |||||| || ||||| || | ||| | || |||||||| || Sbjct 44581 GACCAATTTCTTTGAGAAACGTGTCTCTGACTATCAACGCGC 44540 >seq14752 Length=160396 Score = 132 bits (146), Expect = 1e-25 Identities = 300/448 (67%), Gaps = 5/448 (1%) Strand=Plus/Plus Query 101915 ATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974 |||||||| |||||||| || || || ||||||||| ||| | || || || || || Sbjct 137631 ATTGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTTTCTGGATCGTTTGCCTCTATCTTT 137690 Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034 ||| ||||||| | ||| | |||||||| | || || ||||| |||||| || | Sbjct 137691 TGGCTCAAGAAGCGTGGTTTAATGCCTGGTTTGACTCTTTCTAATGAATTCATTACTCGT 137750 Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC 102094 || ||||| || ||| || |||| |||| | |||| | | ||| ||||| Sbjct 137751 GATGAAGGCCTACATGCTGATTTTGGATGCCTCTTGTTTCATCA---TTTGATTGATCAG 137807 Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 || ||| |||| ||||| ||||| ||||||| || || || ||| | || Sbjct 137808 CCTTCACATGAAACTGTTCTTCAAATTATCACTGAGGCGGTTGAGATCGAAGAGTCATAC 137867 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 | | | ||| || ||||| ||| | || |||||| |||||||||| |||| ||| Sbjct 137868 TTTAATGATTCTCTTCCTGTGCGTTTAATTGGTATGAACGACAAGTTGATGTGCCAATAC 137927 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTT 102274 || |||||| || || || ||||| | || | || | || ||||| Sbjct 137928 GTTAGATTTGTTGCCGACCGTCTCTTGGTATCTCTTGGTTTCCCTAAAAATTACAATGTC 137987 Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCT-CGAGAATAAGACCAACTTTTTTGA 102333 | |||||||| || ||||| ||||| | | || | || || ||||||||||| Sbjct 137988 TCAAACCCCTTTGATTTTATGGAGCTGATTTCTTTGCAAGGAAAA-ACTAACTTTTTTGA 138046 Query 102334 AAAGAGAGTCGCCGAGTATCAACGTGCC 102361 |||| | || | || |||||||||||| Sbjct 138047 AAAGCGTGTTTCTGATTATCAACGTGCC 138074 >seq802 Length=2293163 Score = 104 bits (114), Expect = 5e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94828 AGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAA 94887 || ||||| || || |||||||| || ||||| | | | ||||||||| || Sbjct 2026761 AGCGTATCGTAGATGCCCTCAATACTGTCATCGCGCATTTGGACAAGGAAGCAGCTCGAC 2026820 Query 94888 AGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGC 94947 ||||| ||| || || ||| || ||||| ||||| | ||||| |||||||| | Sbjct 2026821 AGTTGAGGTTTGGGCGTGCCAGCGTTGAACAGAGTGGGCGTGGCATGCGTAAAATACTTG 2026880 Query 94948 CTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACA 95007 ||||||||||| || || | || | | | || || | ||||| ||||| | | Sbjct 2026881 GAGGACATGAGATCGTAGGTCTTAAAGGCGCTCTCGAGATCAGCGCCGTGGATGCCCAGA 2026940 Query 95008 GCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 ||||||||||||||||||| |||||| ||||| || Sbjct 2026941 GCCACACGCATAATCATGTACTGAGGACGCTCCAC 2026975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989385737773335