Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq14752 170 2e-37 seq7507 170 2e-37 seq8767 165 8e-36 seq11881 159 3e-34 >seq14752 Length=160396 Score = 170 bits (188), Expect = 2e-37 Identities = 388/580 (67%), Gaps = 13/580 (2%) Strand=Plus/Minus Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGT 11671 ||||| | ||||| | || |||||||| ||||| ||||| || | | | || | | Sbjct 137797 AAATGATGAAACAAGAGGCATCCAAAATCAGCATGTAGGCCTTCATCACGAGTAATGAAT 137738 Query 11672 TCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA 11731 |||||||||| || || || ||||| || || || || || | |||||| |||| ||| Sbjct 137737 TCATTAGAAAGAGTCAAACCAGGCATTAAACCACGCTTCTTGAGCCAAAAGATAGAGGCA 137678 Query 11732 AATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA- 11790 || || ||||||||||| || ||||||||||| ||||| || || | | | ||| | Sbjct 137677 AACGATCCAGAAAAGAAGATACCCTCCACAGCAGCAAAAGCAACAATACGGACACCAAAA 137618 Query 11791 ---TACCTTGTTGC--TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCAT 11845 | ||| | | |||| |||||||| ||||| | ||| || | || | | Sbjct 137617 GGTTGGTTTGATTCATTAGAGATCCATTTGAAAGCCCAGTTAGCCTTATCCTTAATGACA 137558 Query 11846 TCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCT--ATATTATCTCTTACATATG 11903 || ||||| || || |||||||| | ||| ||||| ||| |||| | | || | Sbjct 137557 GGAATGGTTTCGATGGCATTAAATAA--GAATTCTTTCTCAATAGAATCTTTAATGTAAG 137500 Query 11904 TATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCAT 11963 |||| || |||| |||||||| || ||||| || || || || ||||| || | Sbjct 137499 TATCGATCAATAGCGAGTACATTTCAGAGTGAATGTTCTCAATCATGATCTGAAAACCGT 137440 Query 11964 AGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCAT 12023 |||| || |||||| | || || || | | || ||| | | | |||||||| Sbjct 137439 AGAAGCACTTTGCCTCGGCTACCTTGACTTCATCGCAGAAGTTTTTCACCAGATTCTCAT 137380 Query 12024 TTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGT 12083 | |||||||||||| || ||||| || || | | | | |||||| || | || | Sbjct 137379 TGACAATACCATCAGAAGTAGCAAAGAAGGCCAACACACGAGAAATAAAGAATCTCTCAT 137320 Query 12084 CTTTAGTTAATTT---ATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGG 12140 | | | ||| ||| ||||| ||| || || ||||| | ||| ||||| || | | Sbjct 137319 CATCATTTAGTTTTTCCTCCCAGTCAATCAAGTCCTTTGACAGATCAACTTCCTCGGCTG 137260 Query 12141 TCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGAT 12180 |||| ||| || | | || |||||| | || ||| || Sbjct 137259 TCCAGAAAGAGGCTTCAGCTTTTTTATAGAATTCCCAAAT 137220 >seq7507 Length=243275 Score = 170 bits (188), Expect = 2e-37 Identities = 785/1228 (64%), Gaps = 17/1228 (1%) Strand=Plus/Plus Query 37332 CCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGG 37391 |||||| || ||||| ||||| |||| | ||| | | | |||||||||||| || Sbjct 203359 CCACATGTCGTATTGCAGAATGCCTTGGGAAACAGGACTACCTTCATATGTCTCATACGG 203418 Query 37392 TCCGTAAATT--TTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCG 37449 || ||||| | ||| ||||| | || ||| || || |||| || ||||||||| Sbjct 203419 GCC--AAATTGCTGAGCGAGTTCATTAGAAGCTTCCAGGGCAGCATGGTAGATTGTTTCG 203476 Query 37450 AAAATTTGTATATTTAATATTTTTGCTTCTTCGCTA-TCGAATGCATAGCCCAATAATAT 37508 ||||| || ||||| | || || || || | ||||| ||| | || | || Sbjct 203477 AAAATCTGAATATTCAGCTGCTTGGCCTCAG-GCGAGTCGAAAGCAAACTTCATCAGCAT 203535 Query 37509 AAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCT 37568 ||| |||||||||| || |||||||| | ||| || || | |||| |||| || || | Sbjct 203536 AAAAGCATCAGCCAAGCCTTGAACACCCAAACCAATAGGACGATGTCTCTTGTTGGAGCG 203595 Query 37569 AGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAG 37628 | ||| | ||| |||||||| |||| ||| || || || || | ||| || | Sbjct 203596 CTCTGCTTCAACCACAGGATAATAGTTGACATCGATAATCTTGTTCAAATTCTTGGTGAT 203655 Query 37629 TATTTTCGTAATTATTCTCAA-CTTGTCGAA--CATAAATACGT-TATTATTAACAAATT 37684 | || || | || | || ||| | ||| | || | | ||| |||||| Sbjct 203656 GACCTTAGTGAC-ATCATGAAGCTTTTGGAAATCGTATCTCTCTCTATCGACAACAAAAG 203714 Query 37685 TACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTA 37744 || | ||| || | |||||||| || || ||||| || | | | ||| | Sbjct 203715 AGGGTAAGGCAATGGAGGCCAGATTACAGACGGCTACTTCGTCAGGGCTGGAATATTCAA 203774 Query 37745 TAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTT 37804 || || ||||| || ||||| | | || || |||| ||| ||| ||| ||| Sbjct 203775 CGATTTCAGTACAAAGGTTACTACACTTGATAGTACCCAGATTCTGTTGGTTGCTCTTTC 203834 Query 37805 TATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAA 37864 |||| |||| ||| ||||| || || | || | || ||| |||||||||| | | Sbjct 203835 TATTGCAAGCATCCTTATAGAGCATGAAAGGATTACCGGTTTCAGTTTGAGCCTCCAAGA 203894 Query 37865 TAGATTTCCATAAACTTCT-TGCTTTAACGATCGCTTTAAtttttttCTTTGTTTCGTAT 37923 | | | ||| || ||| | ||| || | | | || || | | | || || Sbjct 203895 TGGCATACCA-AAGCTTTTGTGCCTTGATGGTTTCTCTAGCTCTGCCTTCACGCTCATAC 203953 Query 37924 TCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCAT 37983 | | | | || | || || |||| ||||| || || |||| || ||| ||| Sbjct 203954 TGTTCAAACAAGGTCTTGAATTCATCGCCCCACACTTCACATAGGCCAGGAGCCTCGTTG 204013 Query 37984 GGACACATTAGAGACCATTCTTCATCTTTTTCT-ACGCGTTCCATAAATAAATCAGGTAC 38042 ||||| | |||||||| || | | | | ||| || || |||||||| | |||||| || Sbjct 204014 GGACAGAAGAGAGACCACTCACCGT-TATCTCTGACTCGCTCCATAAAGAGATCAGGCAC 204072 Query 38043 CCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTA- 38101 ||| | ||| ||| ||||| || |||| ||| || || || | || || | | Sbjct 204073 CCAAAGAGCATAAAACAAATCGCGGGCTCTAATTTCGTCCTTACCAAAGTTTTTGCGGAG 204132 Query 38102 AGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTG 38161 | | ||| || |||||||||||| ||||| ||||| | ||| || | | || || | Sbjct 204133 ATCCAGGAACAT-GAATATATCAGCATGCCAGGGTTCCAGATACATGGCGAAAGCGCCAG 204191 Query 38162 GTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAG 38221 | | |||| ||| || |||| | ||| | | ||||| ||| | | | | ||| | Sbjct 204192 GACGCTTATTACCACCTTGATCGACATAGCGGGCCGTGTTGTTAAACACACGCAGCATGG 204251 Query 38222 GTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATAT 38281 | | | |||||||| | |||||| |||| | || |||| ||| |||| || | || Sbjct 204252 GCAAGAGGCCATTAGAGTAGCCGTTGGTACCAGCAATGTAAGAACCAGTAGCACGGACAT 204311 Query 38282 TACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACG 38341 | || ||| || || ||||| || ||||| ||| ||| || || | | Sbjct 204312 TGTGAATATTCAAGCCGATGCCACCAGCCGTCTTTGAAATTTGAGCACAGATCTTGAGGG 204371 Query 38342 TATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTT 38401 | || | |||||||| || ||| || || || | | | |||||| |||| || Sbjct 204372 TTTCGTAGATACCTTCGATCGAGTCCTCTTTCATGGTCAACAAGAAACAAGAGGACAGTT 204431 Query 38402 GAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCG 38461 | || ||||| || || || || || || ||| |||||| |||| | || | Sbjct 204432 GTGGGCGAGGAGTGCCAGCATTGAACAAGGTGGGACTGGCATGTGTGAAATAACGCTCTG 204491 Query 38462 ACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATA 38521 ||| || || |||||||| || | || ||||| ||| || ||||| | || | Sbjct 204492 ACATTAGGTTGTACGTTTCTATGGCAGCGTCGATATCTTGGCCATGGATACCAACAGCGA 204551 Query 38522 CCCTCATTAGCATATGTTGTGGTCTTTC 38549 | | ||| | || ||| || ||||| || Sbjct 204552 CACGCATGATCAAATGCTGAGGTCTCTC 204579 >seq8767 Length=28599 Score = 165 bits (182), Expect = 8e-36 Identities = 455/691 (66%), Gaps = 11/691 (2%) Strand=Plus/Minus Query 36930 TTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGA 36989 |||||||||||| ||||| ||||| | ||| || ||||| || | |||| ||| || Sbjct 17385 TTGACTTTGATCAATAAAAGCACCACGGTCAGCGGCCATGTCGATAATAGTACGTTGGGA 17326 Query 36990 TATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATC---TAAATGTTG 37046 ||||||||||| || || || | ||| | ||| | || | || || || ||| Sbjct 17325 AATCTCCCAAACAGTCTTGTAAAGCGCTTTGAGATTGGCAGGAATTTCAGCTACATCTTG 17266 Query 37047 AATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACT 37106 | ||| ||||||| || || | ||||| || | || |||||| ||| | | | Sbjct 17265 GACAGAGCCATTATCATTCATGATCTTGTTCTTGATCTTATCATTCCAGATAC--CAAGT 17208 Query 37107 T--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTT 37164 | | || || ||| ||| | | || |||| ||||| || ||||| || || | Sbjct 17207 TCGACAAGATCCTTCATTAGCCATTGGTTAACAATTTGAAATTCACCAGACAAGACACGG 17148 Query 37165 CTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGAT 37224 | | || || ||| |||||| ||||||| | ||||||| || | || || || Sbjct 17147 CGCATGTAAATGTTGGAAGTATAGGGTTCAAAGCACTCATTGAAACCGAGAATCTGCGAG 17088 Query 37225 GTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATT 37284 ||||||||||| ||||| ||||| | ||||| ||| | | |||| | ||| Sbjct 17087 GTAGATGCAGTGGGCATAGGTGCCAAGAGAAGAGAATTACGAACGCCATACTTGGCAATG 17028 Query 37285 CTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG-GT-TCTTTAACCACATATCAT 37342 || || || ||| ||||||||||| || || || | || |||||| |||| Sbjct 17027 TCAGCCTTCAGGGTATCCCAGTCCCATAAATCAGTAGGAGTGACATT--CCACATGTCAT 16970 Query 37343 ATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTT 37402 | || | ||| || | ||||| | | |||||| ||||||||| | || Sbjct 16969 ACTGCAACTGACCCTTGGAGACAGGAGAGCCTTCATATGTAGAATAAGGTCCACACTTTG 16910 Query 37403 TAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATAT 37462 ||| ||||||||| | ||| || || |||| ||| || ||||| || ||||| | || Sbjct 16909 CAGCAAGTTCGCAAGAGGCTTCCAGAGCAGCATGATAGATAGTTTCAAAGATTTGCAAAT 16850 Query 37463 TTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCA 37522 ||| | |||| || || ||| || | ||| | || || ||||| | ||||||| Sbjct 16849 TTAGTTTTTTAGCCTCAGGAGAATCAAAAGGATATCTCATCAAGATAAAAGCGTCAGCCA 16790 Query 37523 AACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCA 37582 | || || || || | ||| ||||||| ||| | | ||||| | | | |||| | Sbjct 16789 ATCCTTGGACGCCCAAACCAATGGGTCGATGACGCATGTTAGAGTTGTAAGCTTCTTGAA 16730 Query 37583 CTGGATAATAATTGATATCTATTATTTTATT 37613 | || ||| |||||| ||| || | ||| || Sbjct 16729 CGGGGTAAAAATTGAGATCAATAACTTTGTT 16699 >seq11881 Length=132943 Score = 159 bits (176), Expect = 3e-34 Identities = 358/536 (67%), Gaps = 9/536 (2%) Strand=Plus/Plus Query 11619 TAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAG 11678 |||||| | ||| ||||| || ||| | || ||||| | | || | |||||||| Sbjct 44823 TAAACAAGAGACAGGCAAAGTCGGTATGAAGGCCCTCGTCACGAGAGATCAATTCATTAG 44882 Query 11679 AAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAAC 11738 |||| || || || ||||| | || || || || | ||| || || | |||||||| | Sbjct 44883 AAAAGGTCAACCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAAATGGAGGCAAATGAGC 44942 Query 11739 CAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGT 11798 | || ||||| || || || || || ||||| || |||| |||||| || | | | Sbjct 44943 CTGAGAAGAAGATACCTTCGACGGCAGCAAAAGCAACTAATCTTTCAGCAAAAGAATCAT 45002 Query 11799 TGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTA 11858 ||| ||| |||||||| |||||| ||||| || | || | || || ||||| | Sbjct 45003 TGCCAGAGATCCATTTGAAGGCCCAGTCAGCCTTTCTCTTGATACAGGGGATGGTTTCAA 45062 Query 11859 TAGCGTTAAATAAATGCAT---TTTTTCTATATTATCTCTTACATATGTATCTATTAATA 11915 | |||| ||| | |||| ||||| |||| | | ||| || || || || | Sbjct 45063 TGGCGTCAAAGA---GCATCTCCTTTTCAGCGCTATCCTTGATATAAGTGTCAATCAAAA 45119 Query 11916 AACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTG 11975 ||| || | || | |||||| ||||| || || ||||| || |||||||||||| | Sbjct 45120 GACTGTATGTCTCAGCATGAATGTTTTCAATGGCGATTTGGAAACCATAGAAACATTTGG 45179 Query 11976 CCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCAT 12035 | || | | || || || || |||| ||| | | | || || ||||||| ||||| Sbjct 45180 CTTCAGGAATCTTGACTTCATCACAAAAGTTTTGCACCAGGTTTTCGTTTACAACACCAT 45239 Query 12036 CACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATT 12095 || | ||||| || || | | | | ||||||||| |||||| || | | | | Sbjct 45240 CAGCACTAGCAAAGAACGCCAACACACGAGAGATAAAGTATCTTTCGTTTTCATTCATCT 45299 Query 12096 ---TATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAA 12148 | |||||||||| | ||| || || || || | ||| || | ||||| ||| Sbjct 45300 TGGTTTCCCAATCATGTTGATCCTTAGACAAGTCGATTTCCTCTGCAGTCCAGAAA 45355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468433220971280