Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq14752 111 1e-19 seq8374 93.3 3e-14 >seq14752 Length=160396 Score = 111 bits (122), Expect = 1e-19 Identities = 282/429 (66%), Gaps = 0/429 (0%) Strand=Plus/Plus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 |||| ||| |||||||| | | ||||| ||| | ||||| || || ||||| | || Sbjct 135557 ACGTATCTGTGCCTTTGCTATTATCGAAGGTGTCTTCTTTTCAGGCTCGTTTGCCTCTAT 135616 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 || ||||| || || ||| | ||||| || ||| | | ||||| ||||| |||| Sbjct 135617 CTTTTGGCTCAAAAAGCGTGGTTTAATGCCTGGTTTGACTCTCTCCAATGAGTTCATTAC 135676 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAA 22919 ||||| |||||||| || ||| |||| ||| | | || || ||| || | Sbjct 135677 TCGTGATGAAGGTCTTCATGCTGATTTTGGCTGTCTTTTATTCCACCACATGATTAATCA 135736 Query 22920 ACCGTGTCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTTT 22979 ||| | || || || | ||| || | | || ||||| || || ||| ||| Sbjct 135737 ACCTTCCCATGAAACTGTTCTTCAGATTTTGACGGAGGCCGTCGAGATAGAGCAAAGTTT 135796 Query 22980 CTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTA 23039 ||| |||| ||| | | | ||||||||| ||| ||| | | ||| Sbjct 135797 TTTCAAAGAAGCATTGCCCGTTAGATTGATCGGTATGAATGATGAACTAATGTGTCAGTA 135856 Query 23040 CATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGT 23099 | | | |||||||| ||||| ||| | | | | || |||| | ||| ||||| || Sbjct 135857 CGTCGAATTTGTTGCTGATCGTCTGATGGTTTCTCTTGGTTTCCCCAAGCACTATAATGT 135916 Query 23100 TGCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGA 23159 | | ||||| |||||||| |||||| ||| | || |||| || |||||||||||||| Sbjct 135917 TTCTAATCCCTTTGATTTTATGGATTTGATTTCCCTTCAAGGAAAGACAAACTTCTTTGA 135976 Query 23160 ACGCCGTGT 23168 | ||||| Sbjct 135977 AAAGCGTGT 135985 >seq8374 Length=42181 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 33575 AGATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGGCACGTGCGGCATGATGTAC 33633 ||||||||||||||||||| ||| |||||||| | ||||||||| || |||| ||| Sbjct 10851 AGATGGGCGACAAGTTTGCCTCGCGTCACGGCCAA-AAGGGCACGATTGGTATGACCTAC 10793 Query 33634 GACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCG 33693 |||| ||| | |||||| ||||||| ||| | || ||||| ||||||||||| Sbjct 10792 CGCCAGGAGGATTTCCCGTTCTCGGCCGAGGGCATCACGCCCGACCTCATCATCAACCCG 10733 Query 33694 CATGCGTTCCCCTCGCGCATGAC 33716 || || | || || || ||||| Sbjct 10732 CACGCTATTCCGTCTCGTATGAC 10710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356165710447711