Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq15377 114 1e-20 seq11881 98.7 1e-15 seq2291 95.1 1e-14 seq513 86.0 6e-12 >seq15377 Length=116332 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || ||| | |||| |||| ||| || || || |||||||| || || | Sbjct 81296 CCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCTGAC 81237 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | | || | |||||| | |||||||| ||| |||||| ||||||||| || ||||| Sbjct 81236 AACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGA 81177 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| ||||| || | | || | | |||||| | || ||| Sbjct 81176 ATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACC 81117 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || ||||| || | || || ||||| ||||||||| Sbjct 81116 TCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATA 81069 >seq11881 Length=132943 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 52836 AGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGT--ATCATTGTTG 52893 |||||| || || ||||| |||| || || || |||||||| || || ||| || ||| Sbjct 44773 AGAGGCTGTTGAAATTGAGCAAGAATTCTTGACTGACGCTTTGCCTGTTAATC-TTATTG 44715 Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 | ||||||||| | | | |||||| | ||||| || |||||||| |||||||| || | Sbjct 44714 G-CATGAACGCCAACCTCATGTGCCAATACATTGAATTTGTTGCTGACAGACTCATGGTC 44656 Query 52954 CAGCTCGG-TCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACAT 53012 ||||| | | |||| || ||||| |||||||||| || ||| ||| || Sbjct 44655 GCCCTCGGCTTCGATAAAAT-TTACAATGCCTCTAACCCCTTTGATTTCATGGACATGAT 44597 Query 53013 ATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGT 53051 ||||| | || || || || || || |||| |||||| Sbjct 44596 TTCGCTTCAAGGAAAGACCAATTTCTTTGAGAAACGTGT 44558 >seq2291 Length=180 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||| | |||||||| ||| |||||| ||||||||| || ||||| || |||||||| Sbjct 157 GTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTT 98 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| ||||| || | | || | | |||||| | || ||||| | || | Sbjct 97 GTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTGAT 38 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| || | || || ||||| ||||||||| Sbjct 37 GGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATA 1 >seq513 Length=239887 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| ||||| || |||||||||||||| | || Sbjct 208300 CCACCACGGAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGT--CTA 208243 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | | ||| ||||| | || || || || | || |||||||| || || || | Sbjct 208242 AAAGAGTACGACCATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGG 208183 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||| ||||| ||| ||||| || | | || | || || |||| || | Sbjct 208182 GAATACCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGTATCAGTGGATTCAA 208123 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | |||||||| || | || || ||||| ||||||||| Sbjct 208122 CTTCTAATGTAATGGTCTTGCCAGTAAGAGTCTTAACGAAGATTTGCATA 208073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495967038090400