Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq14752 248 8e-61 seq11881 158 1e-33 >seq14752 Length=160396 Score = 248 bits (274), Expect = 8e-61 Identities = 620/925 (67%), Gaps = 20/925 (2%) Strand=Plus/Minus Query 13514 CAATAAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAAC 13573 || |||| ||| ||||| ||| || ||||| | || ||||| |||| ||||| Sbjct 138137 CATTAAAGCCTAGAAATCCGTATCCAAAGAAAAGTTACGGTCTTCTTTACTAGACATAAC 138078 Query 13574 GCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGA 13633 || |||||| ||| ||| | |||||||| ||||||||||| |||| || || Sbjct 138077 ACCGGCACGTTGATAATCAGAAACACGCTTTTCAAAAAAGTTAGTTTTTCCTTGCAAAGA 138018 Query 13634 TATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTT-ATCACAACCTAGTT 13692 || |||||||||||||| || ||| ||||| | ||| | |||| || Sbjct 138017 AATCAGCTCCATAAAATCAAAGGGGTTTGA-GACATTGTAATTTTTAGGGAAACCAAGAG 137959 Query 13693 CTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATAC 13752 || | | | || |||| ||| || ||||| |||| || | ||||||| Sbjct 137958 ATACCAAGAGACGGTCGGCAACAAATCTAACGTATTGGCACATCAACTTGTCGTTCATAC 137899 Query 13753 CTATTAGTTTTACAGGAATTATATTGGTTAAAA-ATTCTTTTTCTATAGACACAGCCTCT 13811 | |||| ||||||| | | | ||||| || | ||| || || ||||| Sbjct 137898 CAATTAAACGCACAGGAAG-AGAATCATTAAAGTATGACTCTTCGATCTCAACCGCCTCA 137840 Query 13812 TTTATAATAATTGTA--ATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA 13869 | ||||| ||| | | | | |||| ||||| ||| | | ||| | ||| | | Sbjct 137839 GTGATAAT--TTGAAGAACAGTTTCATGTGAAGGCTGATCAATCAAATGATGAAACAAGA 137782 Query 13870 AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 13929 || |||||||| ||| ||||| ||||| | | |||| | ||| || |||| || | Sbjct 137781 GGCATCCAAAATCAGCATGTAGGCCTTCATCACGAGTAATGAATTCATTAGAAAGAGTCA 137722 Query 13930 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGA 13989 | || ||||| || || || || || | |||||| || | ||||| || || ||||||| Sbjct 137721 AACCAGGCATTAAACCACGCTTCTTGAGCCAAAAGATAGAGGCAAACGATCCAGAAAAGA 137662 Query 13990 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGAT-GCTTT--TTTGT 14046 | || ||||| || |||||||| || | | || | ||||| | | | ||| || | Sbjct 137661 AGATACCCTCCACAGCAGCAAAAGCAACAATACGGACACCAAAAGGTTGGTTTGATTCAT 137602 Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 | || |||||||| |||||| | || || | ||||| | | || ||||| || | Sbjct 137601 TAGAGATCCATTTGAAAGCCCAGTTAGCCTTATCCTTAATGACAGGAATGGTTTCGATGG 137542 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA- 14165 |||||||||| |||| ||||| ||| | | |||||| ||||| || | || || | Sbjct 137541 CATTAAATAAGAATTCTTTCTCAATAGAATCTTTAATGTAAGTATCGATCAATA-GCGAG 137483 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC- 14224 |||||||||||||| ||||| || || ||||||||||| || ||||| | || || Sbjct 137482 TACATTTCAGAGTGAATGTTCTCAATCATGATCTGAAAACCGTAGAAGCACTTTGCCTCG 137423 Query 14225 -CGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14283 | ||| ||| ||||| | | || ||| ||| ||| ||||| || ||||||||| Sbjct 137422 GCTACC-TTG-ACTTCATCGCAGAAGTTTTTCACCAGATTCTCATTGACAATACCATCAG 137365 Query 14284 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT- 14342 || ||||| || ||||| | ||||||| || ||| |||| || |||||| Sbjct 137364 AAGTAGCAAAGAAGGCCAACACACGAGAAATAAAGAATCTCTCATCATCATTTAGTTTTT 137305 Query 14343 --TTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14400 | ||| || || ||||| || ||||| ||||| || ||||||| ||| || Sbjct 137304 CCTCCCAGTCAATCAAGTCCTTTGACAGATCAACTTCCTCGGCTGTCCAGAAAGAGGCTT 137245 Query 14401 CAGCTTTTTTATACATTACCCATAT 14425 ||||||||||||| | | |||| || Sbjct 137244 CAGCTTTTTTATAGAATTCCCAAAT 137220 Score = 167 bits (184), Expect = 2e-36 Identities = 571/877 (65%), Gaps = 16/877 (2%) Strand=Plus/Minus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||| || ||| ||| | |||||||||||||| || || |||| || || || || Sbjct 135998 TTGGTAATCAGAAACACGCTTTTCAAAGAAGTTTGTCTTTCCTTGAAGGGAAATCAAATC 135939 Query 13643 CATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGTA 13701 |||||||||||| ||||| | |||| | | || |||| || | | | Sbjct 135938 CATAAAATCAAAGGGATT-AGAAACATTATAGTGCTTGGGGAAACCAAGAGAAACCATCA 135880 Query 13702 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761 | |||||||| ||| || | || ||| |||||| ||| ||||||||| || | | Sbjct 135879 GACGATCAGCAACAAATTCGACGTACTGACACATTAGTTCATCATTCATACCGATCAATC 135820 Query 13762 TTACAGGAATTATATTGGTTAAAAATTCTTTT-TCTATAGACACAGCCTCTTTTATAATA 13820 | || || | | || || |||| |||| ||||| || ||||| | | ||| Sbjct 135819 TAACGGGCAATGC-TTCTTTGAAAAAACTTTGCTCTATCTCGACGGCCTCCGTCAAAATC 135761 Query 13821 ATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 13880 || | | |||| ||||| ||| | | || | || | | ||| ||||| Sbjct 135760 TGAAGAACAGTTTCATGGGAAGGTTGATTAATCATGTGGTGGAATAAAAGACAGCCAAAA 135701 Query 13881 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13940 ||| |||||| || ||||| | | |||| | || || || | || || || ||||| Sbjct 135700 TCAGCATGAAGACCTTCATCACGAGTAATGAACTCATTGGAGAGAGTCAAACCAGGCATT 135641 Query 13941 AATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCA 14000 || || || ||||| | |||||| || | ||||| || || |||||||| | || || Sbjct 135640 AAACCACGCTTTTTGAGCCAAAAGATAGAGGCAAACGAGCCTGAAAAGAAGACACCTTCG 135581 Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCC-AAACGATGCTTT--TTTGTTCGATATCCAT 14057 | |||||| || | ||| | | ||| | || || || ||| | |||||| Sbjct 135580 ATAATAGCAAAGGCACAGATACGTACGGCGAAAGGTTGGTTGGATTCGTTGGCGATCCAT 135521 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 || |||||| |||| || | || || | || || || || |||||||| ||| Sbjct 135520 TTGAAAGCCCAATCAGCCTTGGTCTTGATTTGAGGAATAGTCTCTATGGCATTAAACAAA 135461 Query 14118 TATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 ||||||| || | | ||||| || | ||||| || | || | |||||||||| Sbjct 135460 AATTCCTTTTCAACGGGATCCTTGATAT--ACGTATCGATCAATAGGGAGTACATTTCAG 135403 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT-TGT 14234 |||| ||||| || || ||||||||||| ||||| ||| |||| | || | || | Sbjct 135402 AGTGAATGTTCTCAATCATGATCTGAAAACCGTAAAAACATTTAGCCT-CGCCTATCTTA 135344 Query 14235 ACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 ||||| | |||| || | | ||||||||||| || || ||||| || ||||||| Sbjct 135343 ACTTCATCGCAAAAGTTTGCAACTAAATTTTCATTGACGATGCCATCCGAAGTTGCAAAA 135284 Query 14295 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT---TTCCAATCG 14351 || || |||| || |||| | || || ||||| || ||| | |||||| Sbjct 135283 AAAGCTAATACACGGCCGATGAAGTGGCGTTCATCCTTGTTCAGCTTTTCCTCCCAATCA 135224 Query 14352 GATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14411 || || || || | ||| || || || || ||||| || ||| | ||||| || Sbjct 135223 AGTATGTCTTTGGATAAATCAACCTCTTCCACAGTCCAGAACGAAGCTTCGGCTTTCTTG 135164 Query 14412 TACATTACCCATATTTCTTTATATAATATAGGAAAAA 14448 || | |||| ||||| | ||| ||||| |||| Sbjct 135163 TAAAACTCCCAAATTTCATGGTATTTGATAGGGAAAA 135127 >seq11881 Length=132943 Score = 158 bits (174), Expect = 1e-33 Identities = 545/839 (65%), Gaps = 16/839 (2%) Strand=Plus/Plus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||| ||| || | ||| |||||||| || || || |||| || || || | || Sbjct 44545 TTGATAGTCAGAGACACGTTTCTCAAAGAAATTGGTCTTTCCTTGAAGCGAAATCATGTC 44604 Query 13643 CATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGTA 13701 ||| |||||||| || || | | ||| | | |||||| | || || | | | | Sbjct 44605 CATGAAATCAAAGGGGTT-AGAGGCATTGTAAATTTTATCGAAGCCGAGGGCGACCATGA 44663 Query 13702 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761 ||| ||||||| ||| ||||| ||||| |||| | | ||||| || || || | Sbjct 44664 GTCTGTCAGCAACAAATTCAATGTATTGGCACATGAGGTTGGCGTTCATGCCAATAAGAT 44723 Query 13762 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821 | ||||| | | || || ||||||| || || ||||||||| || || Sbjct 44724 TAACAGGCAAAGCGTCAGTCAAGAATTCTTGCTCAATTTCAACAGCCTCTGCGATGATGC 44783 Query 13822 TTGTAATAATCTCATTAGAAGGAGGATATTTT-AGATGTTTAAAAATTAAACACGCAAAA 13880 | | | | ||| || | ||| || | | || ||||| |||| | | ||| ||||| Sbjct 44784 TCTTTACACGCTC-TTGGGAGGGGGTTTTCTTCAGATGGGTAAACAAGAGACAGGCAAAG 44842 Query 13881 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13940 || |||||||||||| || | | || | ||| || ||||| || || || ||||| Sbjct 44843 TCGGTATGAAGGCCCTCGTCACGAGAGATCAATTCATTAGAAAAGGTCAACCCAGGCATG 44902 Query 13941 AATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCA 14000 | || || || || | ||| || || | |||||||| || || ||||| || || || Sbjct 44903 AGGCCGCGCTTCTTGAGCCAGAAAATGGAGGCAAATGAGCCTGAGAAGAAGATACCTTCG 44962 Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14060 || |||||||| || | ||||| ||| |||| || | ||| || |||||||| Sbjct 44963 ACGGCAGCAAAAGCAACTAATCTTTCAGCAAAAGA---ATCATTGCCAGAGATCCATTTG 45019 Query 14061 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATAT 14120 ||||| |||| ||| | || ||| | || |||||||| || | ||| | Sbjct 45020 AAGGCCCAGTCAGCCTTTCTCTTGATACAGGGGATGGTTTCAATGGCGTCAAAGAGCATC 45079 Query 14121 TCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14178 ||||| || || |||| || || || ||||| | | || || | |||| | Sbjct 45080 TCCTTTTCAGCGCTATCCTTG--ATATAAGTGTCAATCAAAAGACTGTATGTCTCAGCAT 45137 Query 14179 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC-CGACCATTGTACT 14237 | |||||||| || || || || |||||||| || ||| | ||||| || ||| ||| Sbjct 45138 GAATGTTTTCAATGGCGATTTGGAAACCATAGAAACATTTGGCTTCAGGAATCTTG-ACT 45196 Query 14238 TCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14297 || |||| ||| ||| ||||| || || | ||||||| | ||||| || Sbjct 45197 TCATCACAAAAGTTTTGCACCAGGTTTTCGTTTACAACACCATCAGCACTAGCAAAGAAC 45256 Query 14298 GCCAATATGTTTTTAATAAAGTA---TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGAT 14354 ||||| | |||||||| || | |||||| | ||| |||||| | Sbjct 45257 GCCAACACACGAGAGATAAAGTATCTTTCGTTTTCATTCATCTTGGTTTCCCAATCATGT 45316 Query 14355 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 ||||||||| | || | ||| || | ||||| ||| || ||||||| || || Sbjct 45317 TGATCCTTAGACAAGTCGATTTCCTCTGCAGTCCAGAAAGAGGCTTCAGCTTTCTTGTA 45375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479634231165800