Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq14752 241 1e-58 seq11881 145 7e-30 >seq14752 Length=160396 Score = 241 bits (266), Expect = 1e-58 Identities = 612/919 (67%), Gaps = 14/919 (2%) Strand=Plus/Minus Query 13305 TAAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCC 13364 |||| ||| ||||| ||| || ||||| | || ||||| |||| ||||| || Sbjct 138134 TAAAGCCTAGAAATCCGTATCCAAAGAAAAGTTACGGTCTTCTTTACTAGACATAACACC 138075 Query 13365 CATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATAT 13424 |||||| ||| ||| | |||||||||||||||||||| |||| || || || Sbjct 138074 GGCACGTTGATAATCAGAAACACGCTTTTCAAAAAAGTTAGTTTTTCCTTGCAAAGAAAT 138015 Query 13425 ATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTT-ATCACAACCTAGTTCTA 13483 ||||||||||| || || |||| ||||| | ||| | |||| || || Sbjct 138014 CAGCTCCATAAAATCAAAGGGGTTTGA-GACATTGTAATTTTTAGGGAAACCAAGAGATA 137956 Query 13484 ATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTA 13543 || | | || |||| ||| || ||||| |||| || | |||||||| | Sbjct 137955 CCAAGAGACGGTCGGCAACAAATCTAACGTATTGGCACATCAACTTGTCGTTCATACCAA 137896 Query 13544 TTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTA 13603 ||| ||||||| || | | || || | ||| || || ||||| | | Sbjct 137895 TTAAACGCACAGGAAGAGAATCATTAAAGTATGACTCTTCGATCTCAACCGCCTCAGTGA 137836 Query 13604 TAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 13663 |||| || | | |||| ||||| ||| | | ||| | ||| | | || Sbjct 137835 TAATTTGAAGAACAGTTTCATGTGAAGGCTGATCAATCAAATGATGAAACAAGAGGCATC 137776 Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13723 |||||||| ||| ||||| ||||| | | |||| | ||| || |||| || || || | Sbjct 137775 CAAAATCAGCATGTAGGCCTTCATCACGAGTAATGAATTCATTAGAAAGAGTCAAACCAG 137716 Query 13724 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 13783 |||| || || || || || | |||||| || | || || ||||| |||||||| || | Sbjct 137715 GCATTAAACCACGCTTCTTGAGCCAAAAGATAGAGGCAAACGATCCAGAAAAGAAGATAC 137656 Query 13784 CCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGAT-GCTTT--TTTGTTTGATA 13840 |||| || |||||||| || | | || | ||||| | | | ||| || || || | Sbjct 137655 CCTCCACAGCAGCAAAAGCAACAATACGGACACCAAAAGGTTGGTTTGATTCATTAGAGA 137596 Query 13841 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGA 13900 ||||||| |||||| | || || | ||||| | | || |||||||| ||||| | Sbjct 137595 TCCATTTGAAAGCCCAGTTAGCCTTATCCTTAATGACAGGAATGGTTTCGATGGCATTAA 137536 Query 13901 ATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACATT 13959 |||| ||| ||||| ||| | | |||||| ||||| || | || || | |||||| Sbjct 137535 ATAAGAATTCTTTCTCAATAGAATCTTTAATGTAAGTATCGATCAATA-GCGAGTACATT 137477 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG--ACC 14017 |||||||| ||||| || || ||||||||||| || || || | || || | ||| Sbjct 137476 TCAGAGTGAATGTTCTCAATCATGATCTGAAAACCGTAGAAGCACTTTGCCTCGGCTACC 137417 Query 14018 ATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 ||| || || | | || ||| ||| || ||||| |||||||||||| || | Sbjct 137416 -TTG-ACTTCATCGCAGAAGTTTTTCACCAGATTCTCATTGACAATACCATCAGAAGTAG 137359 Query 14078 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT---TTCC 14134 |||| || ||||| | ||||||| || ||| |||| || |||||| | || Sbjct 137358 CAAAGAAGGCCAACACACGAGAAATAAAGAATCTCTCATCATCATTTAGTTTTTCCTCCC 137299 Query 14135 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14194 | || || ||||| || ||||| ||||| || ||||||| ||| || |||||| Sbjct 137298 AGTCAATCAAGTCCTTTGACAGATCAACTTCCTCGGCTGTCCAGAAAGAGGCTTCAGCTT 137239 Query 14195 TTTTATACATTACCCATAT 14213 ||||||| | | |||| || Sbjct 137238 TTTTATAGAATTCCCAAAT 137220 Score = 141 bits (156), Expect = 9e-29 Identities = 492/756 (65%), Gaps = 20/756 (3%) Strand=Plus/Minus Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 |||||||| ||| || | || ||| |||||| ||| ||||||||| || | | | || Sbjct 135875 ATCAGCAACAAATTCGACGTACTGACACATTAGTTCATCATTCATACCGATCAATCTAAC 135816 Query 13554 AGGAATTATATTAGTTAAAAATTCTTTT-TCTATAGACACAGCCTCGTTTATAATAATCT 13612 || | | || || |||| |||| ||||| || ||||| | | ||| || Sbjct 135815 GGGCAATGC-TTCTTTGAAAAAACTTTGCTCTATCTCGACGGCCTCCGTCAAAAT---CT 135760 Query 13613 TAATAA---TGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669 || || | |||| ||||| ||| | | || | || | | ||| |||||| Sbjct 135759 GAAGAACAGTTTCATGGGAAGGTTGATTAATCATGTGGTGGAATAAAAGACAGCCAAAAT 135700 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 || |||||| || ||||| | | |||| | || || || | || || || ||||| | Sbjct 135699 CAGCATGAAGACCTTCATCACGAGTAATGAACTCATTGGAGAGAGTCAAACCAGGCATTA 135640 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 | || || ||||| | |||||| || | || || || || |||||||| | || || | Sbjct 135639 AACCACGCTTTTTGAGCCAAAAGATAGAGGCAAACGAGCCTGAAAAGAAGACACCTTCGA 135580 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCC-AAACGATGCTTT--TTTGTTTGATATCCATT 13846 |||||| || | ||| | | ||| | || || || ||| | ||||||| Sbjct 135579 TAATAGCAAAGGCACAGATACGTACGGCGAAAGGTTGGTTGGATTCGTTGGCGATCCATT 135520 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT 13906 | |||||| |||| || | || || | || || || || ||||| || ||| Sbjct 135519 TGAAAGCCCAATCAGCCTTGGTCTTGATTTGAGGAATAGTCTCTATGGCATTAAACAAAA 135460 Query 13907 GTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 13964 |||||| || | | ||||| || | ||||| || | || | ||||||||||| Sbjct 135459 ATTCCTTTTCAACGGGATCCTTGATAT--ACGTATCGATCAATAGGGAGTACATTTCAGA 135402 Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT-TGTA 14023 ||| ||||| || || ||||||||||| ||||||||| |||| || | | || | | Sbjct 135401 GTGAATGTTCTCAATCATGATCTGAAAACCGTAAAAACATTTAGCCTC-GCCTATCTTAA 135343 Query 14024 CCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAA 14083 | || | |||| || | | || |||||||| || || ||||| || |||||||| Sbjct 135342 CTTCATCGCAAAAGTTTGCAACTAAATTTTCATTGACGATGCCATCCGAAGTTGCAAAAA 135283 Query 14084 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT---TTCCAATCGG 14140 | || |||| || |||| | || || ||||| || ||| | |||||| Sbjct 135282 AAGCTAATACACGGCCGATGAAGTGGCGTTCATCCTTGTTCAGCTTTTCCTCCCAATCAA 135223 Query 14141 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14200 || || || || | ||| || || || || ||||| || ||| | ||||| || | Sbjct 135222 GTATGTCTTTGGATAAATCAACCTCTTCCACAGTCCAGAACGAAGCTTCGGCTTTCTTGT 135163 Query 14201 ACATTACCCATATTTCTTTATATAATATAGGAAAAA 14236 | | |||| ||||| | ||| ||||| |||| Sbjct 135162 AAAACTCCCAAATTTCATGGTATTTGATAGGGAAAA 135127 >seq11881 Length=132943 Score = 145 bits (160), Expect = 7e-30 Identities = 540/838 (64%), Gaps = 14/838 (2%) Strand=Plus/Plus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||| ||| || | ||| ||||| || || || || |||| || || || | || Sbjct 44545 TTGATAGTCAGAGACACGTTTCTCAAAGAAATTGGTCTTTCCTTGAAGCGAAATCATGTC 44604 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 ||| ||||| || || || | | | | | |||||| | || || | | | | Sbjct 44605 CATGAAATCAAAGGGGTTAGAGGCATTGTAAATTTTATCGAAGCCGAGGGCGACCATGAG 44664 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| ||||||| ||| ||||| ||||| |||| | | ||||| || || || || Sbjct 44665 TCTGTCAGCAACAAATTCAATGTATTGGCACATGAGGTTGGCGTTCATGCCAATAAGATT 44724 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 ||||| | | ||| || ||||||| || || |||||||| || || | Sbjct 44725 AACAGGCAAAGCGTCAGTCAAGAATTCTTGCTCAATTTCAACAGCCTCTGCGATGATGCT 44784 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTT-AGATGTTTAAAAATTAAACACGCAAAAT 13669 ||| | | || || | ||| || | | || ||||| |||| | | ||| ||||| | Sbjct 44785 CTTTACACGCTC-TTGGGAGGGGGTTTTCTTCAGATGGGTAAACAAGAGACAGGCAAAGT 44843 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 | |||||||||||| || | | || | ||| || ||||| || || || ||||| | Sbjct 44844 CGGTATGAAGGCCCTCGTCACGAGAGATCAATTCATTAGAAAAGGTCAACCCAGGCATGA 44903 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 || || || || | ||| || || | || ||||| || || ||||| || || || | Sbjct 44904 GGCCGCGCTTCTTGAGCCAGAAAATGGAGGCAAATGAGCCTGAGAAGAAGATACCTTCGA 44963 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849 | |||||||| || | || || ||| |||| || | ||| || |||||||| Sbjct 44964 CGGCAGCAAAAGCAACTAATCTTTCAGCAAAAGA---ATCATTGCCAGAGATCCATTTGA 45020 Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909 ||||| |||| ||| | || ||| | || ||||| || || | || | | Sbjct 45021 AGGCCCAGTCAGCCTTTCTCTTGATACAGGGGATGGTTTCAATGGCGTCAAAGAGCATCT 45080 Query 13910 CCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 |||| || || |||| || || || ||||| | | || || | |||| || Sbjct 45081 CCTTTTCAGCGCTATCCTTG--ATATAAGTGTCAATCAAAAGACTGTATGTCTCAGCATG 45138 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC-TGACCATTGTACCT 14026 |||||||| || || || || |||||||| |||||| | ||||| || ||| || | Sbjct 45139 AATGTTTTCAATGGCGATTTGGAAACCATAGAAACATTTGGCTTCAGGAATCTTG-ACTT 45197 Query 14027 CCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATG 14086 | |||| ||| ||| |||||| || |||| ||||||| | ||||| || | Sbjct 45198 CATCACAAAAGTTTTGCACCAGGTTTTCGTTTACAACACCATCAGCACTAGCAAAGAACG 45257 Query 14087 CCAATATGTTTTTAATAAAGTA---TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTA 14143 |||| | |||||||| || | |||||| | ||| |||||| | Sbjct 45258 CCAACACACGAGAGATAAAGTATCTTTCGTTTTCATTCATCTTGGTTTCCCAATCATGTT 45317 Query 14144 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 ||||||||| | || | ||| || | ||||| ||| || ||||||| || || Sbjct 45318 GATCCTTAGACAAGTCGATTTCCTCTGCAGTCCAGAAAGAGGCTTCAGCTTTCTTGTA 45375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478495253836680