Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq13988 181 2e-40 seq14752 152 8e-32 seq11881 149 9e-31 seq802 111 2e-19 seq13444 84.2 3e-11 >seq13988 Length=264055 Score = 181 bits (200), Expect = 2e-40 Identities = 371/551 (67%), Gaps = 23/551 (4%) Strand=Plus/Plus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 |||| || ||| ||||||||||||| || || || ||| | |||| || |||| |||| Sbjct 239589 AAGAAGGTGATTTGGGGCCAGTGTATGGTTTTCAATGGCGCCACTTCGGTGCCAAATATG 239648 Query 70122 TAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACA 70181 | || ||||| ||||||||| | || || || ||||||||| |||| || ||||| | Sbjct 239649 TTGATTGCGACACAGACTATACAGGGCAAGGCGTTGATCAACTGCAAGAGATAATTGAAA 239708 Query 70182 CTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATT 70241 |||||| ||||| || ||| | | ||| | || || | |||||||||||||| Sbjct 239709 AGATCAAGAATAATCCCACCGATCGCCGTATCATTTTGAGCGCTTGGAATCCTGCAGACA 239768 Query 70242 TGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTT--------TACTCGT- 70292 | | | ||||| |||| || ||||| ||| ||| ||| ||||| | Sbjct 239769 TCCCCAGCATGGCTTTACCGCCTTGTCATGCTTTCTGTCAATTTTATGTCAGTACTCCTC 239828 Query 70293 ------ACGATGGC------AAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGG 70340 ||| | || ||| |||| || | |||||||||| | ||| |||| Sbjct 239829 CTGCTGACGGTAGCCGCGCTAAACTGTCCTGTGTTTTGTATCAGAGATCTTGCGATATGG 239888 Query 70341 GCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACA 70400 |||| || || || || || |||||||| ||| | | ||||| | ||||||||||| Sbjct 239889 GCCTGGGCGTTCCATTCAATATTGCAAGTTATGCCCTATTGACTCGTATGATTGCTCATG 239948 Query 70401 TTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAA 70460 | || | | || | | |||||| |||| ||||| || || | || ||||| || Sbjct 239949 TCACAGACTTGGATCCTGGAGAGTTCATACATACCATGGGTGATACCCATGTGTACGTAG 240008 Query 70461 ATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGG 70520 |||| || || | | |||| ||| | |||||||| || ||| |||||| | || Sbjct 240009 ATCATATAGATGCCCTGAAGGAACAAATTGAACGGGAACCAAGAAATTTTCCTACACTAA 240068 Query 70521 AGTTTGCTCGTAAAGTTGAAAATATTGACAGTTTTA-AGTACGAAGATTTTATAATAAAA 70579 ||||| ||| || | | ||||| ||||| ||| |||||||||||| | || Sbjct 240069 AGTTTAATCGCAAGATCACTAGCATTGATGATTTTACAGT-TGAAGATTTTATATTTGAA 240127 Query 70580 GGTTACGATCC 70590 || ||| |||| Sbjct 240128 GGCTACAATCC 240138 >seq14752 Length=160396 Score = 152 bits (168), Expect = 8e-32 Identities = 371/557 (67%), Gaps = 5/557 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 ||||||||| | || ||||| ||| | ||||| || ||||| | ||| || || |||||| Sbjct 137220 ATTTGGGAATTCTATAAAAAAGCTGAAGCCTCTTTCTGGACAGCCGAGGAAGTTGATCTG 137279 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || |||||| || || |||||| | | ||| |||| || ||||| || Sbjct 137280 TCAAAGGACTTGATTGACTGGGAGGAAAAACTAAATGATGATGAGAGATTCTTTATTTCT 137339 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 | | |||||||||||||| || ||||| || ||||| || |||||| ||| | Sbjct 137340 CGTGTGTTGGCCTTCTTTGCTACTTCTGATGGTATTGTCAATGAGAATCTGGTGAAAAAC 137399 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 |||| | || | | | | |||| |||||| ||||| || || ||||||||| Sbjct 137400 TTCTGCGATGAAGTCAAGGTAGCCGAGGCAAAGTGCTTCTACGGTTTTCAGATCATGATT 137459 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA 125318 |||||| | ||||| ||||||||||| | |||| || | |||||| ||| | Sbjct 137460 GAGAACATTCACTCTGAAATGTACTCGCTATTGATCGATACTTACATTAAAGATTCTATT 137519 Query 125319 CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTCTATACGTAAAAAGGCTCA 125377 ||| | | | ||||| || ||||| || | || ||| || | | |||||| | Sbjct 137520 GAGAAAGAATTCTTATTTAATGCCATCGAAACCATTCCTGTCATTAAG-GATAAGGCTAA 137578 Query 125378 ATGGGTGATTCGGTGGATCGATGACGA--CAAGTC-TTCGTACGCCGACAGACTGGTGGC 125434 |||| | |||||| | | || ||| | | | | | | | | || || Sbjct 137579 CTGGGCTTTCAAATGGATCTCTAATGAATCAAACCAACCTTTTGGTGTCCGTATTGTTGC 137638 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 || || || || ||||| ||||||||||| || ||||| | |||||||||||||| Sbjct 137639 TTTTGCTGCTGTGGAGGGTATCTTCTTTTCTGGATCGTTTGCCTCTATCTTTTGGCTCAA 137698 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 |||||| || | ||||| || |||| | ||| || || || |||| || || || Sbjct 137699 GAAGCGTGGTTTAATGCCTGGTTTGACTCTTTCTAATGAATTCATTACTCGTGATGAAGG 137758 Query 125555 CCTACACTGTGACTTTG 125571 |||||| ||| |||| Sbjct 137759 CCTACATGCTGATTTTG 137775 >seq11881 Length=132943 Score = 149 bits (164), Expect = 9e-31 Identities = 544/846 (64%), Gaps = 32/846 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| || | ||||| || ||| | ||||| || ||||| | || || |||| || Sbjct 45387 ATCTGGCAATTCTACAAGAAAGCTGAAGCCTCTTTCTGGACTGCAGAGGAAATCGACTTG 45328 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| | | |||||||| || ||| ||||| || || | ||||| || Sbjct 45327 TCTAAGGATCAACATGATTGGGAAACCAAGATGAATGAAAACGAAAGATACTTTATCTCT 45268 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 | | ||||| |||||||| | | ||||| | || ||||| || ||| || | Sbjct 45267 CGTGTGTTGGCGTTCTTTGCTAGTGCTGATGGTGTTGTAAACGAAAACCTGGTGCAAAAC 45208 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 || | | | || | | ||||| || | || || || || ||||||||| ||| Sbjct 45207 TTTTGTGATGAAGTCAAGATTCCTGAAGCCAAATGTTTCTATGGTTTCCAAATCGCCATT 45148 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA 125318 || ||| | || | || | ||| | ||||||||| || || ||| || Sbjct 45147 GAAAACATTCATGCTGAGACATACAGTCTTTTGATTGACACTTATATCAAGGATA-GCGC 45089 Query 125319 CGTAAAC-ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCA 125377 | ||| | ||||||||| |||| || || || | || | ||| | ||||||| | Sbjct 45088 TGAAAAGGAGATGCTCTTTGACGCCATTGAAACCATCCCCTGTATCAAGAGAAAGGCTGA 45029 Query 125378 ATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437 |||| | |||||| || | | | |||| || || ||| | || || || Sbjct 45028 CTGGGCCTTCAAATGGATCTCTGGCAATGATTCTTTT---GCTGAAAGATTAGTTGCTTT 44972 Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAA 125497 || ||||| || || |||||||| || || ||||| |||| || ||||||||||| Sbjct 44971 TGCTGCCGTCGAAGGTATCTTCTTCTCAGGCTCATTTGCCTCCATTTTCTGGCTCAAGAA 44912 Query 125498 GCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCT 125557 |||||| |||||||| || |||| ||| || || || ||||| ||||||||||| Sbjct 44911 GCGCGGCCTCATGCCTGGGTTGACCTTTTCTAATGAATTGATCTCTCGTGACGAGGGCCT 44852 Query 125558 ACACTGTGACTTTGCCATTCTACTGTTT-CGCAACT------ATCTGCGTCCCGAGTGCA 125610 || ||||||||| ||| ||||| | || || | | | |||| || Sbjct 44851 TCATACCGACTTTGCCTGTCTCTTGTTTACCCATCTGAAGAAAACCCCCTCCCAAG---- 44796 Query 125611 GATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGT 125670 |||| || |||| ||||| | | || || || || || ||||| | Sbjct 44795 -----AGCG-TGTAAAGAGCATCA------TCGCAGAGGCTGTTGAAATTGAGCAAGAAT 44748 Query 125671 TTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGT 125730 | | || || | | || || | | |||||||||||| ||| || |||||| | | Sbjct 44747 TCTTGACTGACGCTTTGCCTGTTAATCTTATTGGCATGAACGCCAACCTCATGTGCCAAT 44688 Query 125731 ACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT--GATTGGCCGCAAGATTTACAA 125788 |||| || ||||| || || | || || || | | || | || |||||||| Sbjct 44687 ACATTGAATTTGTTGCTGACAGACTCATGGTCGCCCTCGGCTT--CGATAAAATTTACAA 44630 Query 125789 CGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848 ||| || ||||||||||||||| || || || || | || |||||||| || || Sbjct 44629 TGCCTCTAACCCCTTTGATTTCATGGACATGATTTCGCTTCAAGGAAAGACCAATTTCTT 44570 Query 125849 CGAGAA 125854 ||||| Sbjct 44569 TGAGAA 44564 >seq802 Length=2293163 Score = 111 bits (122), Expect = 2e-19 Identities = 179/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 98007 ATTACCATCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGAT-TCCGAC 98065 ||| ||| ||||||||| || || || |||||||||| ||||||||||| || | Sbjct 2025260 ATTCCCAACATCCCGGATGATTTAAAAAGGCTCTACAAGACGGTCTGGGAGATCTCTCAG 2025201 Query 98066 CAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTT 98125 | || | ||||| |||||||| || |||| || | ||||||||| || || | Sbjct 2025200 CGC-ACCATCATCGACATGGCTGCTGATAGAGCTGCGTTTATTGACCAGTCGCAGTCTAT 2025142 Query 98126 CAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATG 98185 || ||| | ||| || |||| |||| || | || || || || || ||||| || Sbjct 2025141 GAACTTGTTCTCTGCTGAACCCAACTACGGTAAGCTCACGTCCATGCATTTCTACGCCTG 2025082 Query 98186 GAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCAT 98245 ||| ||||| | |||||||||||||| ||||| || ||| | ||| | ||||||| Sbjct 2025081 GAAAAAGGGATTGAAGACGGGCATGTATTATCTTCGATCAAGACCTGCCGTCGATGCCAT 2025022 Query 98246 ACCATTTACGGTGGA 98260 |||||| || || Sbjct 2025021 CAAATTTACTGTCGA 2025007 >seq13444 Length=200645 Score = 84.2 bits (92), Expect = 3e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGAT-TCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 ||||||||||||| |||||| | || | | | | || ||||| |||||||| ||| | Sbjct 118734 TCTACAAGACTGTGTGGGAGCTCTCTCAGCGTGTC-CTCATCGACATGGCTGCTGACCGT 118792 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 | || || | || ||| |||||| | || ||| | ||| || || | ||| || Sbjct 118793 GCTGCCTTTGTCGATCAGTCGCAATCGCTTAACTTGTTCTCTGCGGATCCTAACTATAGC 118852 Query 98157 CGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216 ||| | | || || || |||||| ||||| |||||||| ||||| |||||| | ||| Sbjct 118853 CGTCTTTCGTCCATGCATTTTTACTGCTGGAAGAAGGGCCTAAAGACCGGCATGCAATAT 118912 Query 98217 CTGAGAACAA 98226 || | |||| Sbjct 118913 CTCAAGACAA 118922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740914350716120