Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq513 120 2e-22 seq15377 114 9e-21 seq2291 96.9 3e-15 >seq513 Length=239887 Score = 120 bits (132), Expect = 2e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| || || || ||||| ||||| || || ||| | | | ||||| Sbjct 208283 AACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAAAGAGTACGACCATCTTC 208224 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||| ||||| ||| | || | |||||||||||| ||||| ||||| ||||| Sbjct 208223 TAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTG 208164 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| | || || ||||| | ||| || ||||| |||||||| || Sbjct 208163 GATCTTTTGCTTGACATTATCAATCGTATCAGTGGATTCAACTTCTAATGTAATGGTCTT 208104 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAA 15377 || || ||||| || || || |||||||||||||| ||||| Sbjct 208103 GCCAGTAAGAGTCTTAACGAAGATTTGCATATTTGATTGTAAAA 208060 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || || || || || ||||| || ||| | | | |||||| Sbjct 208510 ACCAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGAAAGAGTACGACCATCTTCT 208451 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| ||||| ||| | || | |||||||||||| ||||| ||||| ||||| Sbjct 208450 AATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 208391 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || ||||| || ||| || ||||| ||||| ||||| Sbjct 208390 ATCTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAACGTAATAGTTTTG 208331 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| || ||||| |||||| Sbjct 208330 CCAGTAAGAGTTTTGACGAAAATCTGCATA 208301 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||||||||| ||||| ||| | || | |||||||||||| ||||| ||||| || Sbjct 203262 TCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTA 203203 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || |||||| ||| ||| | || || ||||| || ||| || ||||| ||||| Sbjct 203202 TCTTGAATTTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTAATA 203143 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| || ||||| || || ||||| |||||| Sbjct 203142 GTTTTACCAGTAAGAGTCTTGACGAAAATCTGCATA 203107 >seq15377 Length=116332 Score = 114 bits (126), Expect = 9e-21 Identities = 167/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | |||| |||||| || || || || || |||||||| || | Sbjct 81296 CCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTC--TG 81239 Query 15197 AGAATTCTCGC--GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || ||| ||||||||||||||| || || | ||||||||||| ||||| | Sbjct 81238 ACAACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAG 81179 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||||||||| || || ||| ||| | || || | ||| ||||| Sbjct 81178 GAATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTA 81119 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 | || || || |||||||| || || || || || || |||||||||||||||| Sbjct 81118 CCTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATATTTG 81065 >seq2291 Length=180 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 |||||||||||||||| || || | ||||||||||| ||||| ||||| ||||||| Sbjct 158 CGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTT 99 Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 |||| || || ||| ||| | || || | ||| |||||| || || || | Sbjct 98 TGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTGA 39 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||| || || || || || || |||||||||||| Sbjct 38 TGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362110177359417