Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq15377 87.8 1e-12 seq2291 87.8 1e-12 >seq15377 Length=116332 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 43961 CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCT 44020 ||| | || || |||||||| || ||||| ||||| ||||||||||| |||| | |||| Sbjct 81230 CGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCT 81171 Query 44021 TCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACC 44080 ||||| ||| || ||||| ||||| || ||| | || | | || || || | Sbjct 81170 TCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAA 81111 Query 44081 GTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || ||||| || || | ||||| || || |||||||| Sbjct 81110 GTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 81070 >seq2291 Length=180 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 43961 CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCT 44020 ||| | || || |||||||| || ||||| ||||| ||||||||||| |||| | |||| Sbjct 162 CGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCT 103 Query 44021 TCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACC 44080 ||||| ||| || ||||| ||||| || ||| | || | | || || || | Sbjct 102 TCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAA 43 Query 44081 GTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || ||||| || || | ||||| || || |||||||| Sbjct 42 GTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354709987926276