Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq11881 136 3e-27 >seq11881 Length=132943 Score = 136 bits (150), Expect = 3e-27 Identities = 536/838 (64%), Gaps = 14/838 (2%) Strand=Plus/Plus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 |||||| || || | ||| ||||| || || || ||||||| | |||||| | || Sbjct 44545 TTGATAGTCAGAGACACGTTTCTCAAAGAAATTGGTCTTTCCTTGAAGCGAAATCATGTC 44604 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC---ACCCTAATTCTAGTAA 12978 ||| ||||| || || || || || ||| ||||| | || | | | | Sbjct 44605 CATGAAATCAAAGGGGTTA---GAGGCATTGTAAATTTTATCGAAGCCGAGGGCGACCAT 44661 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 | ||||||||||||||| || ||||| || ||| | | |||||| || || | Sbjct 44662 GAGTCTGTCAGCAACAAATTCAATGTATTGGCACATGAGGTTGGCGTTCATGCCAATAAG 44721 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 || ||||||| ||| || || || || | || || || ||||| || || | || Sbjct 44722 ATTAACAGGCAAAGCGTCAGTCAAGAATTCTTGCTCAATTTCAACAGCCTCTGCGATGAT 44781 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGAT-AGATGCTTAAACATCATACATGCAA 13157 | ||||| ||| ||| || || ||| | ||||| |||||| | ||| |||| Sbjct 44782 G-CTCTTTACACGCTCTTGGGAGGGGGTTTTCTTCAGATGGGTAAACAAGAGACAGGCAA 44840 Query 13158 AATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCA 13217 | || || | || || || | | || | || || ||||| || | || |||| Sbjct 44841 AGTCGGTATGAAGGCCCTCGTCACGAGAGATCAATTCATTAGAAAAGGTCAACCCAGGCA 44900 Query 13218 TAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTT 13277 | || || || || || | ||| || || | ||||| || || || || || || |||| Sbjct 44901 TGAGGCCGCGCTTCTTGAGCCAGAAAATGGAGGCAAATGAGCCTGAGAAGAAGATACCTT 44960 Query 13278 CAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACT 13337 | || || ||||| || | || |||||| || | | | ||| | ||||| | Sbjct 44961 CGACGGCAGCAAAAGCAACTAATCTTTCAGCAAAAGAATCATTGCCAGAG---ATCCATT 45017 Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397 | |||||||| || ||| || | ||| || |||| || |||| ||| | Sbjct 45018 TGAAGGCCCAGTCAGCCTTTCTCTTGATACAGGGGATGGTTTCAATGGCGTCAAAGAGCA 45077 Query 13398 AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAAT 13457 | ||||| || || |||||||| || ||||| | || || | || | || Sbjct 45078 TCTCCTTTTCAGCGCTATCCTTGATATAAGTGTCAATCAAAAGACTGTATGTCTCAGCAT 45137 Query 13458 GAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT 13517 |||| ||||| || || |||||||||||||| |||||| | || || | | || |||| Sbjct 45138 GAATGTTTTCAATGGCGATTTGGAAACCATAGAAACATTTGGCTTCAGGAATCTTGACTT 45197 Query 13518 CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaG 13577 | |||| ||| | | ||||||||| || | || ||| | |||||| || | Sbjct 45198 CATCACAAAAGTTTTGCACCAGGTTTTCGTTTACAACACCATCAGCACTAGCAAAGAACG 45257 Query 13578 CAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACT---TTAACCAATCTGGAA 13634 | | | | ||||| | | |||||||||| || || || |||||| | Sbjct 45258 CCAACACACGAGAGATAAAGTATCTTTCGTTTTCATTCATCTTGGTTTCCCAATCATGTT 45317 Query 13635 AATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 ||| || || || || | ||||| | ||||| ||||| || |||| ||||| || Sbjct 45318 GATCCTTAGACAAGTCGATTTCCTCTGCAGTCCAGAAAGAGGCTTCAGCTTTCTTGTA 45375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430900265125074