Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq11881 212 1e-49 seq15377 136 9e-27 seq14752 125 2e-23 seq513 113 1e-19 seq2291 91.5 3e-13 >seq11881 Length=132943 Score = 212 bits (234), Expect = 1e-49 Identities = 373/540 (69%), Gaps = 5/540 (1%) Strand=Plus/Minus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATA-GATTGGAAAA- 268817 || ||||| ||||||| ||| ||| | || ||||| | || | || | |||||| ||| Sbjct 45360 GCCTCTTTCTGGACTGCAGAGGAAATCGACTTGTCTAAGGA-TCAACATGATTGGGAAAC 45302 Query 268818 --ATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875 | | || | | |||||| ||||| ||| | | | ||||| ||||| | Sbjct 45301 CAAGATGAATGAAAACGAAAGATACTTTATCTCTCGTGTGTTGGCGTTCTTTGCTAGTGC 45242 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 ||||||| | || |||||||| || || | || || ||| | || || |||||||||| Sbjct 45241 TGATGGTGTTGTAAACGAAAACCTGGTGCAAAACTTTTGTGATGAAGTCAAGATTCCTGA 45182 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 ||||| |||||| || || ||||| || || || ||||| |||||| | |||| ||||| Sbjct 45181 AGCCAAATGTTTCTATGGTTTCCAAATCGCCATTGAAAACATTCATGCTGAGACATACAG 45122 Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTAT 269055 ||| || || || |||||||| | |||| | |||||| | | || ||| | || Sbjct 45121 TCTTTTGATTGACACTTATATCAAGGATAGCGCTGAAAAGGAGATGCTCTTTGACGCCAT 45062 Query 269056 GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAG 269115 ||| || |||| | | | ||| |||| ||||| | |||||||| | | Sbjct 45061 TGAAACCATCCCCTGTATCAAGAGAAAGGCTGACTGGGCCTTCAAATGGATCTCTGGCAA 45002 Query 269116 CGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGG 269175 | ||| | ||||| |||||||||||||| || || |||||||| ||||| || || Sbjct 45001 TGATTCTTTTGCTGAAAGATTAGTTGCTTTTGCTGCCGTCGAAGGTATCTTCTTCTCAGG 44942 Query 269176 GTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTC 269235 || |||||| | || || ||| | ||||| | ||||| ||||| || || || || || Sbjct 44941 CTCATTTGCCTCCATTTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGGTTGACCTTTTC 44882 Query 269236 TAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTAC 269295 ||| |||||||| | ||||| || | || |||||| || ||| | || ||||| Sbjct 44881 TAATGAATTGATCTCTCGTGACGAGGGCCTTCATACCGACTTTGCCTGTCTCTTGTTTAC 44822 >seq15377 Length=116332 Score = 136 bits (150), Expect = 9e-27 Identities = 175/240 (73%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| | ||| |||||||| | || ||||| |||||||| || ||||| Sbjct 81299 ATACCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCT 81240 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | | | |||||||||| |||||| || ||||| || | | || || || ||| Sbjct 81239 GACAACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGA 81180 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || |||||| || ||||| || | | ||| | |||| Sbjct 81179 GGAATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCT 81120 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT-TTTGTGTAC 104568 ||||| | || || || || ||||||||||| || || || || ||||| ||||| ||| Sbjct 81119 ACCTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATATTTGTTTAC 81060 >seq14752 Length=160396 Score = 125 bits (138), Expect = 2e-23 Identities = 342/519 (66%), Gaps = 11/519 (2%) Strand=Plus/Plus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA---A 268816 || ||||| ||||| | || ||||| |||||||| | ||||| || || ||| | | Sbjct 137247 GCCTCTTTCTGGACAGCCGAGGAAGTTGATCTGTCAAAGGACTTGATTGACTGGGAGGAA 137306 Query 268817 AATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGT 268876 || |||| || || ||| ||||| ||| | | | || || ||||| | | Sbjct 137307 AAACTAAATGATGATGAGAGATTCTTTATTTCTCGTGTGTTGGCCTTCTTTGCTACTTCT 137366 Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 |||||||| || || || ||||| || | || ||||| | || || || | | || Sbjct 137367 GATGGTATTGTCAATGAGAATCTGGTGAAAAACTTCTGCGATGAAGTCAAGGTAGCCGAG 137426 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || | || || ||||| || ||||| || || || ||||| || || |||||| Sbjct 137427 GCAAAGTGCTTCTACGGTTTTCAGATCATGATTGAGAACATTCACTCTGAAATGTACTCG 137486 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATG 269056 ||||| || |||||||| || | ||| | || || || ||||| | | || Sbjct 137487 CTATTGATCGATACTTACATTAAAGATTCTATTGAGAAAGAATTCTTATTTAATGCCATC 137546 Query 269057 AGAACTATGGACTGTG-TGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATA---AACGA 269112 ||| || |||| | | | || || | |||||| | |||||||| || || Sbjct 137547 GAAACCATTC-CTGTCATTAAGGATAAGGCTAACTGGGCTTTCAAATGGATCTCTAATGA 137605 Query 269113 T---AGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTT 269169 | | |||| || | | | ||||||||||| ||||| || ||||| ||||| Sbjct 137606 ATCAAACCAACCTTTTGGTGTCCGTATTGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTT 137665 Query 269170 TTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAAC 269229 ||| || || |||||| ||||||||||| | ||||| | || | ||||| || || || Sbjct 137666 TTCTGGATCGTTTGCCTCTATCTTTTGGCTCAAGAAGCGTGGTTTAATGCCTGGTTTGAC 137725 Query 269230 TTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 | | ||||| ||||| || | | || ||||| |||| Sbjct 137726 TCTTTCTAATGAATTCATTACTCGTGATGAAGGCCTACA 137764 >seq513 Length=239887 Score = 113 bits (124), Expect = 1e-19 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||||| ||| || || || ||||| || | ||||| || || || || ||||| ||| Sbjct 203262 TCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTA 203203 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 || ||||| ||| || ||||| || | ||||| ||| ||| || |||| ||||||| Sbjct 203202 TCTTGAATTTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTAATA 203143 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||||||||| || || || || |||||||| Sbjct 203142 GTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 203108 >seq2291 Length=180 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||||| |||||| || ||||| || | | || || || ||||| || |||||| Sbjct 159 CCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCT 100 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || || || |||||| || ||||| || | | ||| | ||||||||| | || Sbjct 99 TTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTG 40 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| || || || || ||||| Sbjct 39 ATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151167718409996