Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq513 96.9 3e-15 seq15377 87.8 2e-12 seq2291 87.8 2e-12 >seq513 Length=239887 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||||||||||||||| | |||||| || | | || || || ||| | Sbjct 208282 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTC--TAAAAGAGTACGACCATCTT 208225 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | | || || ||| | || || | | ||| || ||||| ||||||||||| ||||| | Sbjct 208224 CTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTT 208165 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || ||| |||||| | | || |||| | || || || | || ||||| | Sbjct 208164 GGATCTTTTGCTTGACATTATCAATCGTATCAGTGGATTCAACTTCTAATGTAATGGTCT 208105 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||||||||| || || ||||| ||||| Sbjct 208104 TGCCAGTAAGAGTCTTAACGAAGATTTGCAT 208074 >seq15377 Length=116332 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 ||||| ||| ||||||| || | |||||| ||||||||||||||||||||||| | || Sbjct 81215 TGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGGATC 81156 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 ||| |||||| | | |||| | || || || | ||||||||||| ||| Sbjct 81155 TTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTGATGGTTTTGCCA 81096 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || || ||||| Sbjct 81095 GTAAGTGTCTTGACGAAAATTTGCAT 81070 >seq2291 Length=180 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 ||||| ||| ||||||| || | |||||| ||||||||||||||||||||||| | || Sbjct 147 TGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGGATC 88 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 ||| |||||| | | |||| | || || || | ||||||||||| ||| Sbjct 87 TTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTGATGGTTTTGCCA 28 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || || ||||| Sbjct 27 GTAAGTGTCTTGACGAAAATTTGCAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448203575881320