Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq15039 176 7e-40 seq11163 147 3e-31 >seq15039 Length=557031 Score = 176 bits (194), Expect = 7e-40 Identities = 197/261 (75%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||| |||||| |||||||||||||| || |||||||| ||||| Sbjct 317612 GCCAAGCGTCACAGAAAGAT-TCTTCGTGATAACATCCAAGGTATTACCAAGCCTGCTAT 317554 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| ||||| |||||||| || |||||| ||||||| | | |||||||| | Sbjct 317553 TCGTCGTCTCGCTCGCCGTGGTGGTGTTAAGCGTATCTCTGGTCTTATTTATGAAGAAAC 317494 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| ||| |||||| | ||||| | | |||||||| ||||||| | |||||||| Sbjct 317493 TCGCAGTGTCTTGAAGGTTTTCCTTGAAAACGTTATCCGTGATGCTGTTACTTATACCGA 317434 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | || || || ||||| ||||| | |||||||| | ||| | || || Sbjct 317433 ACATGCCAAGAGAAAAACGGTTACCTCTTTGGATGTTGTCTATGCTCTTAAAAGACAGGG 317374 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | || |||||||| Sbjct 317373 TCGTACTCTCTACGGTTTTGG 317353 >seq11163 Length=202862 Score = 147 bits (162), Expect = 3e-31 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16472 GGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCT 16531 || || || ||||| ||||| |||||||| |||||||||||||| ||||||||| ||||| Sbjct 37601 GGCATTACTAAGCCTGCTATTCGTCGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATCTCT 37542 Query 16532 GGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCAT 16591 || | | || ||||||| ||| ||| | ||| ||||||| | | ||| || | | Sbjct 37541 GGTCTCATTTACGAAGAGACTCGCAGCGTTCTCAAGGTCTTCCTTGAAAACGTCATTCGT 37482 Query 16592 GATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTC 16651 ||||| | |||||| |||||||| || | |||||||| ||||| ||||| |||| Sbjct 37481 GATGCCGTTACCTATACTGAGCACGCCAAGAGAAAGACTGTTACCTCTTTGGATGTCGTT 37422 Query 16652 TATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || || | || | ||||| |||| |||||||||| || Sbjct 37421 TACGCTCTCAAGAGACAAGGTCGTACTCTTTATGGTTTCGG 37381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79060902981441