Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq14752 154 2e-32 seq11881 109 6e-19 >seq14752 Length=160396 Score = 154 bits (170), Expect = 2e-32 Identities = 590/911 (65%), Gaps = 36/911 (4%) Strand=Plus/Minus Query 21128 TAAAAATCAGCATCTAATGAGAAAACATTA---TCTTCtttttttGACATAATTCCCATT 21184 || ||||| | ||| || |||||| ||| |||||||| | ||||||| || Sbjct 138127 TAGAAATCCGTATCCAA--AGAAAAG-TTACGGTCTTCTTTACTAGACATAACACCGGCA 138071 Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 |||||||||| ||| | ||||| ||||| || || ||||||| ||| || || Sbjct 138070 CGTTGATAATCAGAAACACGCTTTTCAAAAAAGTTAGTTTTTCCTTGCAAAGAAATCAGC 138011 Query 21245 TCCATAAAATCAAATGGATTTTC-AGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 |||||||||||||| || ||| | ||| ||| ||||| |||| || | || Sbjct 138010 TCCATAAAATCAAAGGGGTTTGAGACATTGTAAT-TTTTAGGGAAACCAAGAGATACCAA 137952 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 | | || || |||||| | ||||| ||||| || | |||||||| || || Sbjct 137951 GAGACGGTCGGCAACAAATCTAACGTATTGGCACATCAACTTGTCGTTCATACCAATTAA 137892 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 |||||||||| | | || | || | ||| || || || ||| || || Sbjct 137891 ACGCACAGGAAGAGAATCATTAAAGTATGACTCTTCGATCTCAACCGCCTCAGTGATAAT 137832 Query 21424 ATTTATTATCC--TAGATGTACTAGGGGGATACAAT-AATTGTTTAAACATCAAACATGC 21480 || | | | | |||| ||| ||| |||| || || | ||||| | ||| | Sbjct 137831 -TTGAAGAACAGTTTCATGTGA-AGGCTGAT-CAATCAAATGATGAAACAAGAGGCATCC 137775 Query 21481 AAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGG 21540 ||||||| ||| | |||||||| | | | || ||||||||||||| || ||||| || Sbjct 137774 AAAATCAGCATGTAGGCCTTCATCACGAGTAATGAATTCATTAGAAAGAGTCAAACCAGG 137715 Query 21541 CATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCC 21600 |||||| || | ||| || | |||||| || || ||||| | ||| |||||||| || || Sbjct 137714 CATTAAACCACGCTTCTTGAGCCAAAAGATAGAGGCAAACGATCCAGAAAAGAAGATACC 137655 Query 21601 CTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATG------TAGATTCTTTATCCAA 21654 ||| || |||||||| ||||| | || |||| | | | ||||| ||| | Sbjct 137654 CTCCACAGCAGCAAAAGCAACAATACGGACACCAAAAGGTTGGTTTGATTCATTA---GA 137598 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 |||||||| ||||| || ||||| || ||||| | ||| || || || || || Sbjct 137597 GATCCATTTGAAAGCCCAGTTAGCCTTATCCTTAATGACAGGAATGGTTTCGATGGCATT 137538 Query 21715 TAA-AAGATGAtt-tttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATAC 21772 || |||| ||| ||| ||| ||| | ||| ||| Sbjct 137537 AAATAAGA--ATTCTTTCTCAATAGAATCTTTAATGTAAGTATCGATCAATAGCGAGTAC 137480 Query 21773 ATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTG-A 21831 |||||||| || || || || ||| |||||||| ||||| || || ||||||| | Sbjct 137479 ATTTCAGAGTGAATGTTCTCAATCATGATCTGAAAACCGTAGAAGCACTTTGCCTCGGCT 137420 Query 21832 ACATTGA--ACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 || |||| | ||| | || | || | ||| || ||||| || || |||||| Sbjct 137419 ACCTTGACTTCATCGCA--GAAGTTTTTCA-CCAGATTCTCATTGACAATACCATCAGAA 137363 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT--- 21946 | ||||| || ||||| | | ||||| ||| || | ||| ||| |||| Sbjct 137362 GTAGCAAAGAAGGCCAACACACGAGAAATAAAGAATCTCTCATCATCATTTAGTTTTTCC 137303 Query 21947 TTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATA 22006 | ||| || | || || ||||| | ||| ||||| || | |||||| || || | Sbjct 137302 TCCCAGTCAATCAAGTCCTTTGACAGATCAACTTCCTCGGCTGTCCAGAAAGAGGCTTCA 137243 Query 22007 GCCTTTTTATA 22017 || |||||||| Sbjct 137242 GCTTTTTTATA 137232 Score = 122 bits (134), Expect = 9e-23 Identities = 320/480 (67%), Gaps = 24/480 (5%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 |||||| || ||||| | | |||| | |||||||||| ||||| || Sbjct 136058 TTAAAAGTCGGCATCAAGAGTGAAACTACGATCTTCTTTTGCATTCATAACACCAGCACG 135999 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||| |||||| ||| | ||||| || || ||||||||||||| | || || | || Sbjct 135998 TTGGTAATCAGAAACACGCTTTTCAAAGAAGTTTGTCTTTCCTTGAAGGGAAATCAAATC 135939 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTAC-------AACCCAGTTCTG 21299 |||||||||||| ||||| ||| || ||| || | | |||| || | Sbjct 135938 CATAAAATCAAAGGGATT---AGA----AACATTATAGTGCTTGGGGAAACCAAGA---G 135889 Query 21300 ATA--ATAAT-CTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATAC 21356 | | || | | ||| || |||||||| | || |||||||||| |||| |||||||| Sbjct 135888 AAACCATCAGACGATCAGCAACAAATTCGACGTACTGACACATTAGTTCATCATTCATAC 135829 Query 21357 CGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAA 21416 |||||||| | || || | |||| | | |||||| || ||||| |||||| || Sbjct 135828 CGATCAATCTAACGGGCAATGCTTCTTTGAAAAAACTTTGCTCTATCTCGACGGCCTCCG 135769 Query 21417 CAATTATATTTATTATCCTAG-ATGTACTAGGGGGATACAATAAT-TGTTTAAACATCAA 21474 | || | | | | ||| ||| ||| ||| || || | || | | Sbjct 135768 TCAAAATCTGAAGAACAGTTTCATGGGA-AGGTTGATT-AATCATGTGGTGGAATAAAAG 135711 Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 ||| |||||||| ||| | ||||||||| | | | || || ||||| || | || || Sbjct 135710 ACAGCCAAAATCAGCATGAAGACCTTCATCACGAGTAATGAACTCATTGGAGAGAGTCAA 135651 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 ||| |||||||| || | |||||| | |||||| || || ||||| | ||||||||||| Sbjct 135650 ACCAGGCATTAAACCACGCTTTTTGAGCCAAAAGATAGAGGCAAACGAGCCTGAAAAGAA 135591 >seq11881 Length=132943 Score = 109 bits (120), Expect = 6e-19 Identities = 309/475 (65%), Gaps = 9/475 (2%) Strand=Plus/Plus Query 21465 TAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAG 21524 |||||| | ||| ||||| || ||| | || || || | | || |||||||||| Sbjct 44823 TAAACAAGAGACAGGCAAAGTCGGTATGAAGGCCCTCGTCACGAGAGATCAATTCATTAG 44882 Query 21525 AAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTC 21584 |||| || || || ||||| | || | ||| || | ||| || || || ||||||| | Sbjct 44883 AAAAGGTCAACCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAAATGGAGGCAAATGAGC 44942 Query 21585 CTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATT 21644 |||| ||||| || || || ||||||||||| |||||||||| |||| | | ||| | Sbjct 44943 CTGAGAAGAAGATACCTTCGACGGCAGCAAAAGCAACTAATCTTTCAGCAAA---AGAAT 44999 Query 21645 CTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTAT 21704 | || | | |||||||| ||||| | |||||| || ||||| || || | Sbjct 45000 CATTGCCAGAGATCCATTTGAAGGCCCAGTCAGCCTTTCTCTTGATACAGGGGATGGTTT 45059 Query 21705 CAATAGCTTTTAAAAGATGAttt--ttttCATCTACATCGGTTATGNNNNNNNNNNNNNN 21762 |||| || | ||||| || | |||||| | ||| | || Sbjct 45060 CAATGGC--GTCAAAGAGCATCTCCTTTTCAGCGCTATCCTTGATATAAGTGTCAATCAA 45117 Query 21763 NNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCT 21822 ||| || | |||| ||| || ||||| || || || || || || || |||||| | Sbjct 45118 AAGACTGTATGTCTCAGCATGAATGTTTTCAATGGCGATTTGGAAACCATAGAAACATTT 45177 Query 21823 TGCCTC-TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTC 21881 || || ||| ||| || || | |||| ||| ||| |||||| ||||| | | Sbjct 45178 GGCTTCAGGAATCTTG-ACTTCATCACAAAAGTTTTGCACCAGGTTTTCGTTTACAACAC 45236 Query 21882 CATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATC 21936 ||||| ||||| || ||||| | | ||||| |||| |||||| || Sbjct 45237 CATCAGCACTAGCAAAGAACGCCAACACACGAGAGATAAAGTATCTTTCGTTTTC 45291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531796833339880