Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq513 109 5e-19 seq15377 100 3e-16 seq2291 82.4 7e-11 >seq513 Length=239887 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 26753 TTTTTAGTCAAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCA 26811 |||||| ||| |||| |||||| | || || || || | ||||| || | || || Sbjct 208059 TTTTTA--CAATCAAATATGCAAATCTTCGTTAAGACTCTTACTGGCAAGACCATTACAT 208116 Query 26812 TCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAG 26871 | ||| | ||||| | || || || || | ||||| |||||||| ||||| |||| Sbjct 208117 TAGAAGTTGAATCCACTGATACGATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAG 208176 Query 26872 GGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 26931 | || || || || |||||| | || |||| || |||||| ||| | ||||||| | | | Sbjct 208177 GTATTCCCCCAGACCAACAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGATGGTCGTA 208236 Query 26932 ACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | ||||||||||||||||| ||||||||| | || |||| || Sbjct 208237 CTCTTTTAGACTATAACATTCAAAAGGAATCTACTCTTCACTTGGTTCT 208285 >seq15377 Length=116332 Score = 100 bits (110), Expect = 3e-16 Identities = 166/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 26762 AAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAG 26820 ||||||| |||||| | || || || ||| | ||||| ||| | ||||| | || ||| Sbjct 81062 AAACAAATATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAG 81121 Query 26821 AATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTC 26880 ||||| ||||| || || | ||||| |||||||| ||||||||||| || |||| Sbjct 81122 AATCATCCGACAGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTC 81181 Query 26881 CCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC- 26939 | || || ||| | | || | | ||| |||||| | ||||| | | ||| | Sbjct 81182 CAGACCAGCAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGGCG-CTCGTTGTCA 81240 Query 26940 GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| |||||||| || ||||| || | ||||| || || | || ||||| || Sbjct 81241 GACTACAACATTCAGAAGGAATCAACGCTTCATCTAGTGCTTCGTCTAAGAGGTGG 81296 >seq2291 Length=180 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || ||| | ||||| ||| | ||||| | || |||||||| | Sbjct 2 ATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATCATCC 61 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||| || || | ||||| |||||||| ||||||||||| || ||||| || || Sbjct 62 GACAGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAG 121 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGA 26923 ||| | | || | | ||| |||||| | ||||| Sbjct 122 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGA 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478568839450640