Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq15377 113 4e-20 seq513 104 2e-17 seq7507 91.5 1e-13 >seq15377 Length=116332 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| ||||||| ||| | || || ||||| ||||||||||| || | Sbjct 81296 CCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCTGAC 81237 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | | |||| ||| |||| || || || || |||| ||||| |||||||| ||||| Sbjct 81236 AACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGA 81177 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || ||||||| | || | | |||| || || | Sbjct 81176 ATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACC 81117 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || || || || || |||||||| ||||| Sbjct 81116 TCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 81070 >seq513 Length=239887 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || || ||||| || || ||||| || Sbjct 208528 CCACCACGAAGACGAAGTACCAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGAA 208469 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| |||||||| ||| | || | ||| || ||||| || || Sbjct 208468 AGAGTACGACCATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGA 208409 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||||| | || | ||||||| || || | Sbjct 208408 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACT 208349 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| || || |||||||| |||||||||||||| Sbjct 208348 TCTAACGTAATAGTTTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 208302 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || || |||||||||||||| || || Sbjct 208300 CCACCACGGAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAA 208241 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| |||||||| ||| | || | ||| || ||||| || || Sbjct 208240 AGAGTACGACCATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGA 208181 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||||| | || | ||||| ||||| || | Sbjct 208180 ATACCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGTATCAGTGGATTCAACT 208121 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || ||||| || ||||| || ||||| Sbjct 208120 TCTAATGTAATGGTCTTGCCAGTAAGAGTCTTAACGAAGATTTGCAT 208074 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || |||| |||||||| ||| | || | ||| || ||||| || || || ||||| || Sbjct 203262 TCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTA 203203 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||||| ||||||| | || | ||||||| || || | || | |||| Sbjct 203202 TCTTGAATTTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTAATA 203143 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||||| || ||||| || |||||||||||||| Sbjct 203142 GTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 203108 >seq7507 Length=243275 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 145067 TGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGAC 145126 || || || || || | ||||| || ||||| ||| || ||| |||| ||||| | Sbjct 203168 TGGAATTCACCAGCAAGAACACGTCGGGTATACAAGTTTGATGTGTAGGGCTCAAAGCAT 203227 Query 145127 TCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAA 145186 ||||| ||||| |||||||| ||| | || || ||||| || | ||| | || Sbjct 203228 TCGTTGAAGCCCATGATTTGAGAGGTTGAGGCAGTAGGCATAGGAGCAAGCAAGAGGGAG 203287 Query 145187 TTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAAGTC 145246 || || | |||||| || || | ||| || | | |||||||||| || ||||| Sbjct 203288 TTACGGACGCCGTGATTTGCAATCTTTTCTTTCAAGGATGCCCAATCCCAAAGAGAAGTA 203347 Query 145247 GGCCTCACGTCCCACATGTCGTACTGCAAAATGCC 145281 || | || | |||||||||||| |||| |||||| Sbjct 203348 GGTGTGACATTCCACATGTCGTATTGCAGAATGCC 203382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471920539198080