Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq513 141 6e-29 seq15509 140 2e-28 seq2836 140 2e-28 seq15377 105 4e-18 seq1349 102 5e-17 >seq513 Length=239887 Score = 141 bits (156), Expect = 6e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | |||||||||||||| ||||| || |||||||| || || Sbjct 208529 ACCACCACGAAGACGAAGTACCAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGA 208470 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | ||| | || |||||||| || ||||| || || || |||||||| || | ||| Sbjct 208469 AAGAGTACGACCATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGG 208410 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||| ||||| || |||||||| ||||| | | |||| | |||||| Sbjct 208409 AATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCATATCGGTAGATTCAAC 208350 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| ||||||||||| || || | ||||| ||||| |||||||| Sbjct 208349 TTCTAACGTAATAGTTTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 208302 Score = 118 bits (130), Expect = 7e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| |||||||| ||||||||||| || || || Sbjct 208302 TACCACCACGGAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCTA 208243 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| | || |||||||| || ||||| || || || |||||||| || | || Sbjct 208242 AAAGAGTACGACCATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGG 208183 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| || |||||||| ||||| | | ||||| ||||| Sbjct 208182 GAATACCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGTATCAGTGGATTCAA 208123 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||||||||||| || || || || | || || ||||| || ||||| ||| Sbjct 208122 CTTCTAATGTAATGGTCTTGCCAGTAAGAGTCTTAACGAAGATTTGCATATTT 208070 Score = 113 bits (124), Expect = 3e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || |||||||| || ||||| || || || |||||||| || | ||| | ||||| || Sbjct 203262 TCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTA 203203 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || |||||||||||| ||||| | | |||| | ||||||||||||||||||| Sbjct 203202 TCTTGAATTTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTAATA 203143 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| || | || || ||||| |||||||| Sbjct 203142 GTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 203108 >seq15509 Length=12340 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3237 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3296 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3297 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3331 Score = 100 bits (110), Expect = 2e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| || Sbjct 5319 CTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTTTCGT 5378 Query 20009 TAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 5379 CAATATTTAGCTTTA 5393 >seq2836 Length=1950 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1049 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1108 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1109 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1143 >seq15377 Length=116332 Score = 105 bits (116), Expect = 4e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | ||| | ||| | |||||| || ||||| ||||| ||||| || | Sbjct 81298 TACCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCTG 81239 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || |||| ||||||||||| |||||||| || | ||||| || || | | Sbjct 81238 ACAACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAG 81179 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| || |||||||| ||||| | | | || ||| | Sbjct 81178 GAATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTA 81119 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || || || || ||||| || || | || || ||||| || ||||| ||| Sbjct 81118 CCTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATATTT 81066 >seq1349 Length=1672 Score = 102 bits (112), Expect = 5e-17 Identities = 70/78 (90%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTC-AAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 460 CTCTCTTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCT 401 Query 20006 CGGTAATATTTAGCCTTA 20023 || ||||||||| ||| Sbjct 400 CGCAGATATTTAGCTTTA 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334883367123347