Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq14752 224 1e-53 seq11881 224 1e-53 >seq14752 Length=160396 Score = 224 bits (248), Expect = 1e-53 Identities = 384/556 (69%), Gaps = 6/556 (1%) Strand=Plus/Minus Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 |||| || | ||||| ||||| || || | || || ||||| | || ||||| | Sbjct 137775 CAAAATCAGCATGTAGGCCTTCATCACGAGTAATGAATTCATTAGAAAGAGTCAAACCAG 137716 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | | || || |||||||||||||| || || ||||| |||||||| || |||| Sbjct 137715 GCATTAAACCACGCTTCTTGAGCCAAAAGATAGAGGCAAACGATCCAGAAAAGAAGATAC 137656 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG---GAATTACTGCTGA 93272 | ||||| || ||||| || |||||||| | ||||| | | || | | | || Sbjct 137655 CCTCCACAGCAGCAAAAGCAACAATACGGACACCAAAAGGTTGGTTTGATTCATTAGAGA 137596 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 ||||||| |||||||| | || || | |||||| ||| | |||||||| || |||| Sbjct 137595 TCCATTTGAAAGCCCAGTTAGCCTTATCCTTAATGACAGGAATGGTTTCGATGGCATTAA 137536 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 ||| | | ||| ||| |||||| ||||| |||||||| || || || ||||||| Sbjct 137535 ATAAGAATTCTTTCTCAATAGAATCTTTAATGTAAGTATCGATCAATAGCGAGTACATTT 137476 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 |||| || | ||||| || || || || |||||||| || | || || | | || Sbjct 137475 CAGAGTGAATGTTCTCAATCATGATCTGAAAACCGTAGAAGCACTTTGCCTCGGCTACCT 137416 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 ||||| | | || | | || ||||| |||||||| |||||||| || | |||| Sbjct 137415 TGACTTCATCGCAGAAGTTTTTCACCAGATTCTCATTGACAATACCATCAGAAGTAGCAA 137356 Query 93513 aaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT---ATCCCAAT 93569 | || ||||| | | | ||||| | |||||||||| || || || ||||| | Sbjct 137355 AGAAGGCCAACACACGAGAAATAAAGAATCTCTCATCATCATTTAGTTTTTCCTCCCAGT 137296 Query 93570 CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTT 93629 | | || ||||| ||||| ||||| ||| | ||||| || || ||||| ||||||| Sbjct 137295 CAATCAAGTCCTTTGACAGATCAACTTCCTCGGCTGTCCAGAAAGAGGCTTCAGCTTTTT 137236 Query 93630 TGTACATATCCCATAT 93645 | || | ||||| || Sbjct 137235 TATAGAATTCCCAAAT 137220 Score = 212 bits (234), Expect = 7e-50 Identities = 391/568 (69%), Gaps = 8/568 (1%) Strand=Plus/Minus Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 |||| || | ||| | |||||| || || | || ||||||||| || || ||||| | Sbjct 135705 CAAAATCAGCATGAAGACCTTCATCACGAGTAATGAACTCATTGGAGAGAGTCAAACCAG 135646 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | | || || || ||||||||||| || || ||||| || ||||| || | || Sbjct 135645 GCATTAAACCACGCTTTTTGAGCCAAAAGATAGAGGCAAACGAGCCTGAAAAGAAGACAC 135586 Query 93216 CTTCCACGGCTGCAAATGCCACA-ATACGTTCGGCAAAAT-TTGC--GGAATTACTGCTG 93271 |||| | ||||| || ||| |||||| |||| ||| ||| ||| | || | Sbjct 135585 CTTCGATAATAGCAAAGGC-ACAGATACGTACGGCGAAAGGTTGGTTGGATTCGTTGGCG 135527 Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331 |||||||| ||||||||||| || || |||| || ||| | || || || || ||| Sbjct 135526 ATCCATTTGAAAGCCCAATCAGCCTTGGTCTTGATTTGAGGAATAGTCTCTATGGCATTA 135467 Query 93332 AATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391 || | | || || | | ||| || || |||||||| || || || |||||| Sbjct 135466 AACAAAAATTCCTTTTCAACGGGATCCTTGATATACGTATCGATCAATAGGGAGTACATT 135407 Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451 ||||| || | ||||| || || || || ||||| |||||| |||| || ||| Sbjct 135406 TCAGAGTGAATGTTCTCAATCATGATCTGAAAACCGTAAAAACATTTAGCCTCGCCTATC 135347 Query 93452 TGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511 | ||||| | |||| | | || | |||||||||||| || ||||| || | |||| Sbjct 135346 TTAACTTCATCGCAAAAGTTTGCAACTAAATTTTCATTGACGATGCCATCCGAAGTTGCA 135287 Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT---ATCCCAA 93568 |||||||| |||| | | || || || ||||| | || ||||| |||||| Sbjct 135286 AAAAAAGCTAATACACGGCCGATGAAGTGGCGTTCATCCTTGTTCAGCTTTTCCTCCCAA 135227 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 || || ||||| || | ||| || ||||| |||||||| ||||| ||||| ||||| Sbjct 135226 TCAAGTATGTCTTTGGATAAATCAACCTCTTCCACAGTCCAGAACGAAGCTTCGGCTTTC 135167 Query 93629 TTGTACATATCCCATATGTCTTGATATT 93656 ||||| | ||||| || || || |||| Sbjct 135166 TTGTAAAACTCCCAAATTTCATGGTATT 135139 >seq11881 Length=132943 Score = 224 bits (248), Expect = 1e-53 Identities = 608/916 (66%), Gaps = 46/916 (5%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 |||||| || ||||| || ||||| || |||| || |||| |||||||| ||| Sbjct 44482 TTAGAAGTCGGCATCCAGAGTAAAAGTCTTTTCAACAGGTGTCTTGTTCATAACGCCAGC 44541 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATC-- 92859 ||| || || || ||| ||||||||||| |||||||||| | || ||| Sbjct 44542 GCGTTGATAGTCAGAGACACGTTTCTCAAAGAAATTGGTCTTTCCTTGAAGCGAAATCAT 44601 Query 92860 ------GAATTCACTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTC 92913 ||| ||| || | || || ||| || ||| || || | | | Sbjct 44602 GTCCATGAAATCAA-AGGGGTTAGA-----GGCATTGTAAATTTTATCGAAGCCGAGGGC 44655 Query 92914 GTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCC 92973 | || | ||| ||||| |||||||| ||||| || |||| | | ||||| || Sbjct 44656 GACCATGAGTCTGTCAGCAACAAATTCAATGTATTGGCACATGAGGTTGGCGTTCATGCC 44715 Query 92974 TAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTT 93033 | |||| ||||| | |||||| |||||||| |||| ||| ||| |||| || ||| Sbjct 44716 AATAAGATTAACAGGCAAAGCGTCAGTCAAGAATTCTTGCTCAATTTCAACAGCCTCTGC 44775 Query 93034 CAAGATT-TCTATTACTCTACTATTTGGTGGT--TTTTGTACGACATAATTGTACATTAA 93090 | ||| ||| |||| | || || || || |||| | | | || | ||| | Sbjct 44776 GATGATGCTCT-TTACACG-CTCTTGGGAGGGGGTTTTCTTC-AGATGGGTAAACAAGAG 44832 Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 || |||||||||||||| | || ||||| || || ||||| ||||| || || || Sbjct 44833 ACAGGCAAAGTCGGTATGAAGGCCCTCGTCACGAGAGATCAATTCATTAGAAAAGGTCAA 44892 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || || || ||||||||||| || || || ||||| || || || || Sbjct 44893 CCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAAATGGAGGCAAATGAGCCTGAGAAGAA 44952 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC- 93269 |||||||| ||||| ||||| || || | | ||| |||||| |||| | ||| Sbjct 44953 GATACCTTCGACGGCAGCAAAAGCAACTAATCTTTCAGCAAAA------GAATCATTGCC 45006 Query 93270 --TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 ||||||||| || ||||| || || ||| |||| ||||| || | ||||| || || Sbjct 45007 AGAGATCCATTTGAAGGCCCAGTCAGCCTTTCTCTTGATACAGGGGATGGTTTCAATGGC 45066 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCG---AATCTCGTATGTATGTATCGATTAACAGAGA 93384 || ||| || ||||| || || | ||| || || || || || || ||| Sbjct 45067 GTCAAAGAG--CATCTC-CTTTTCAGCGCTATCCTTGATATAAGTGTCAATCAAAAGACT 45123 Query 93385 ATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTC 93444 || | |||| ||| | || || || || |||||||| || ||||||||| | ||||| Sbjct 45124 GTATGTCTCAGCATGAATGTTTTCAATGGCGATTTGGAAACCATAGAAACATTTGGCTTC 45183 Query 93445 CGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 | |||| ||||| | | |||| | | || || ||||| || || | |||||| | Sbjct 45184 AGGAATCTTGACTTCATCACAAAAGTTTTGCACCAGGTTTTCGTTTACAACACCATCAGC 45243 Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAA--ATGTTTC----TCA-TCATCTTTAA 93557 ||||| || ||||| | | | ||||| || |||| ||| ||||||| Sbjct 45244 ACTAGCAAAGAACGCCAACACACGAGAGATAAAGTATCTTTCGTTTTCATTCATCTT--- 45300 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 | || |||||||| | |||| || || | |||| ||| || ||||||| || || | Sbjct 45301 GGTT-TCCCAATCATGTTGATCCTTAGACAAGTCGATTTCCTCTGCAGTCCAGAAAGAGG 45359 Query 93618 CTTCTGCTTTTTTGTA 93633 |||| ||||| ||||| Sbjct 45360 CTTCAGCTTTCTTGTA 45375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556751954595880