Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq513 149 5e-31 seq15377 123 2e-23 seq2291 100 2e-16 seq7507 89.7 4e-13 >seq513 Length=239887 Score = 149 bits (164), Expect = 5e-31 Identities = 184/251 (73%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 22196 TATAGTTTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGG 22255 |||| |||| |||| | ||| |||||||| || ||||| ||| | || || || || Sbjct 208053 TATATTTTTTTACAATC--AAATATGCAAATCTTCGTTAAGACTCTTACTGGCAAGACCA 208110 Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 | || | ||||| ||| |||| ||||| | || || |||| ||||| || ||||||| Sbjct 208111 TTACATTAGAAGTTGAATCCACTGATACGATTGATAATGTCAAGCAAAAGATCCAAGACA 208170 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 |||| |||||||| || || |||||||||||||| || |||||||| || ||||| ||| Sbjct 208171 AGGAAGGTATTCCCCCAGACCAACAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGATG 208230 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGAT 22435 || || | | || || ||||||||||| ||||| || | || || ||| | || Sbjct 208231 GTCGTACTCTTTTAGACTATAACATTCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTC 208290 Query 22436 TGCGCGGAGGT 22446 | || || ||| Sbjct 208291 TCCGTGGTGGT 208301 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||| | || || ||||| | || | ||||| ||| | ||| Sbjct 208302 ATGCAGATTTTCGTCAAAACTCTTACTGGCAAAACTATTACGTTAGAAGTTGAATCTACC 208361 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||| | || || |||| ||||| || ||||||||||| || ||||| || || ||| Sbjct 208362 GATATGATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAA 208421 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || |||||||| || ||||| ||| || || | || || ||||| Sbjct 208422 CAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGATGGTCGTACTCTTTCAGACTACAAT 208481 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || ||||| || | ||||| || Sbjct 208482 ATCCAGAAGGAATCTACTCTTCATTTGGT 208510 Score = 129 bits (142), Expect = 5e-25 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || |||||||| | || | ||||| ||| | ||| Sbjct 203108 ATGCAGATTTTCGTCAAGACTCTTACTGGTAAAACTATTACATTAGAAGTTGAATCTACC 203167 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||| | || || |||| |||||||||||||| ||||| |||||||| || || ||| Sbjct 203168 GATATGATTGATAATGTCAAGCAAAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAA 203227 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374 ||||||||||| || |||||||| || ||||| ||| Sbjct 203228 CAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGAT 203263 >seq15377 Length=116332 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||||||||| || || || | || || ||||| ||||| | || || ||| | Sbjct 81066 AAATATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATC 81125 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 |||| | | || || |||| ||||| || |||||||| || |||||||| || || Sbjct 81126 ATCCGACAGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGA 81185 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || |||||| | || |||||||| ||||| ||||| || ||| | | || || || Sbjct 81186 CCAGCAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGGCGCTCGTTGTCAGACTA 81245 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||||||| || ||||| || | ||| |||| Sbjct 81246 CAACATTCAGAAGGAATCAACGCTTCATCTAGT 81278 >seq2291 Length=180 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || ||||| ||||| | || || ||| | || Sbjct 2 ATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATCATCC 61 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || |||| ||||| || |||||||| || |||||||| || || || Sbjct 62 GACAGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAG 121 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 |||||| | || |||||||| ||||| ||||| || Sbjct 122 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGA 156 >seq7507 Length=243275 Score = 89.7 bits (98), Expect = 4e-13 Identities = 679/1081 (63%), Gaps = 31/1081 (3%) Strand=Plus/Plus Query 128782 TCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCTGTT 128841 |||||||||||||| || || || | || || ||||| | ||| ||||| || || Sbjct 202814 TCCACGGTAAATTTGATGGCATCGACAGCAGGGCGAGTGCGAAGATAATACATACCAGTC 202873 Query 128842 TTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGTTGA 128901 |||||||| ||| |||| | | ||| || | || || | | | || | Sbjct 202874 TTCAAACCCTTTTGCCAACCATAAAAGTGCATACTAGTTAATTTGCCAAAATTAGGCTCT 202933 Query 128902 CTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATA 128961 | | ||| || || | |||||| ||||| ||||| | || ||||| ||||||||| Sbjct 202934 CCAATAAAGATGTTCAGACTTTGACTCTGATCGATAAAAGCACCACGATCAGCAGCCATA 202993 Query 128962 CCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTT 129021 ||| ||| | | ||| ||||| || ||||| || | || ||| | || Sbjct 202994 TCAACCAAGGTACGCTGGCTCAGCTCCCAGACAGTTTTATACATGTCCTTCAACTTTTGA 203053 Query 129022 GGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGT 129081 || || | ||||| || | ||| | | || || |||| || | Sbjct 203054 GGGATGCCAGGGATGTTTTGGATAGAGCCACCATCAGACATGATCATGTTCTTGATGTCC 203113 Query 129082 TCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGAAAG 129141 ||||| | | | || || || |||||| | ||| | ||||| | ||| || Sbjct 203114 TCGTTCCAAAGACCCATTTCGACCAAATCCTTCAGCAACCAAGGGTTTACAATTTGGAAT 203173 Query 129142 TCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTG 129201 ||||| || | ||| || || || | ||| ||| | |||||||| |||| ||| Sbjct 203174 TCACCAGCAAGAACACGTCGGGTATACAAGTTTGATGTGTAGGGCTCAAAGCATTCGTTG 203233 Query 129202 TTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAA-AGCGAGTTTCG 129260 ||| | ||||||| |||| || || ||||| ||| | |||| || ||||| || Sbjct 203234 AAGCCCATGATTTGAGAGGTTGAGGCAGTAGGCATAGGAGCAA-GCAAGAGGGAGTTACG 203292 Query 129261 CAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGTGGGTGT 129320 | ||||| | | ||| | || ||| || || ||| ||||| | || || ||||| Sbjct 203293 GACGCCGTGATTTGCAATCTTTTCTTTCAAGGATGCCCAATCCCAAAGAGAAGTAGGTGT 203352 Query 129321 GTGATTCCACAAGTCGTATTGCAATATACC----CAAACTGGCGGGACTGGAAAAGTAGG 129376 | |||||||| ||||||||||| || || ||| | ||||| || | Sbjct 203353 GACATTCCACATGTCGTATTGCAGAATGCCTTGGGAAA----CAGGACTACCTTCATATG 203408 Query 129377 AATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAA 129436 || | | ||| | | || | ||| | ||||||| || || || | Sbjct 203409 TCTCATACGGGCCAAATTGCTGAGCGAGTTCATTAGAAGCTTCCAGGGCAGCATGGTAGA 203468 Query 129437 TTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCT-GGTCGCTTTCGTACGGCATAC-G 129494 |||||||| ||| | | |||| | ||||||| | || ||| | ||| || Sbjct 203469 TTGTTTCGAAAATCTGAATATTCAGCTGCTTGGCCTCAGGCG-AGTCG-AAAGCAAACTT 203526 Query 129495 CAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCT 129554 || || ||| | || ||||| ||||||| ||||| ||| || || |||||| | | Sbjct 203527 CATCAGCATAAAAGCATCAGCCAAGCCTTGAACACCCAAACCAATAGGACGATGTCTCTT 203586 Query 129555 ATTGGATTTTTGTGC--CGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAA 129612 ||||| | ||| | || ||| ||||| ||||||| || ||||| ||||| ||| Sbjct 203587 GTTGGAGCGCTCTGCTTCAACCACA--GGATAATAGTTGACATCGATAATCTTGTTCAAA 203644 Query 129613 TTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTA-CTCGCCTACATC 129671 |||||| | | || || || | | | | ||| |||| ||| ||| || ||| Sbjct 203645 TTCTTGGTGATGACCTTAGTGACATCATGAAGCTTTTGGAAATCGTATCTC-TCTCTATC 203703 Query 129672 GATGTCGACAAATTGATTG-ACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTT 129730 || | ||||| || | | ||| ||||||| ||| |||||||| ||||| Sbjct 203704 GA---CAACAAA-AGAGGGTAAGGCAATGGAGGCCAGATTACAGACGGCTACTTCGTCAG 203759 Query 129731 TGTCACTG---TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAAT 129787 | ||| || || || ||||| | || | |||||| || || || |||| || Sbjct 203760 GG---CTGGAATATTCAACGATTTCAGTACAAAGGTTACTACACTTGATAGTACCCAGAT 203816 Query 129788 GCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTT 129847 || ||| || || || | ||||||||||| || || | |||| | || | || |||| Sbjct 203817 TCTGTTGGTTGCTCTTTCTATTGCAAGCATCCTTATAGAGCATGAAAGGATTACCGGTTT 203876 Query 129848 C 129848 | Sbjct 203877 C 203877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419648009942905