Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11881 152 1e-31 seq802 114 2e-20 seq7507 113 9e-20 >seq11881 Length=132943 Score = 152 bits (168), Expect = 1e-31 Identities = 353/528 (67%), Gaps = 8/528 (2%) Strand=Plus/Minus Query 42618 GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG 42677 ||||| || || || ||||| ||||||| ||||| |||||||| |||| |||||| Sbjct 45066 GCCATTGAAACCATCCCCTGTATCAAGAGAAAGGCTGACTGGGCCTTCAAATGGATCTCT 45007 Query 42678 AGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTC 42737 | | | | | || | || || | || || ||| | |||||||| || |||||| Sbjct 45006 GG---CAATGATTCTTTTGCTGAAAGATTAGTTGCTTTTGCTGCCGTCGAAGGTATCTTC 44950 Query 42738 TTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACT 42796 ||||| ||| | || |||||||| |||||||||||| || || || ||||| || | Sbjct 44949 TTCTCAGGCTCATTTGCCTCCATTTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCTGGGTT 44891 Query 42797 CACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 ||||| || || ||| | ||| | |||||||| || |||| ||||||||||| || Sbjct 44890 GACCTTTTCTAATGAATTGATCTCTCGTGACGAGGGCCTTCATACCGACTTTGCCTGTCT 44831 Query 42857 CCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCAC 42916 | |||| | ||| || | | | | ||||| | ||||| || | ||||||| | Sbjct 44830 CTTGTT---TACCCATCTGAAGAAAACCCCCTCCCAAGAGCGTGTAAAGAGCATCATCGC 44774 Query 42917 GGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGG 42976 ||||| || || || ||| | || ||| | || | | |||| || || | || Sbjct 44773 AGAGGCTGTTGAAATTGAGCAAGAATTCTTGACTGACGCTTTGCCTGTTAATCTTATTGG 44714 Query 42977 CATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCA 43036 ||||||| | ||||||||||| | ||||| | | || || ||| ||| || | Sbjct 44713 CATGAACGCCAACCTCATGTGCCAATACATTGAATTTGTTGCTGACAGACTCATGGTCGC 44654 Query 43037 GATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTC 43096 | || || | ||||| | | |||||| || || ||||| | || || Sbjct 44653 CCTCGGCTTCGATAAAATTTACAATGCCTCTAACCCCTTTGATTTCATGGACATGATTTC 44594 Query 43097 GTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 | | | || |||||||| || || ||||| || ||| | ||||| || Sbjct 44593 GCTTCAAGGAAAGACCAATTTCTTTGAGAAACGTGTCTCTGACTATCA 44546 >seq802 Length=2293163 Score = 114 bits (126), Expect = 2e-20 Identities = 246/368 (67%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 245072 CCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAG 245131 ||| ||||||| |||| ||||||||||||||||| || || ||||| ||||||| ||| Sbjct 2026509 CCATTGTTCTTTCTCAATTCCAAAAAGTCAAAGACATCCACATGCCAAGGCTCCAGGTAC 2026568 Query 245132 ACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTG 245191 | || | | || || || ||| ||||| || | | | | ||||| Sbjct 2026569 ATGGCAAAGTTACCATTACGTTTTCCGCCGCCCTGCGTGACAAAACGCGCCGTGTCGTTG 2026628 Query 245192 AAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCG 245251 || | |||||| |||| || || ||||| ||| ||| || ||||| ||||||| | Sbjct 2026629 AACACGCGCAGCATAGGAACGATACCGTTGGAGGTGCCATTCGTGCCAGCAATGTAGGAG 2026688 Query 245252 CCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGG 245311 || ||| | || || | || | ||| | ||||| ||| |||||| || | Sbjct 2026689 CCTGAGCCACGGATCTTTTGAAAGGCAACGCCGACACCGCCCGCGGCCTTGGATATACGT 2026748 Query 245312 GCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGA 245371 || ||| || | | || || |||||||| || ||||| ||| | || || Sbjct 2026749 GCACAGGTCGTCAGCGTATCGTAGATGCCCTCAATACTGTCATCGCGCATTTGGACAAGG 2026808 Query 245372 AAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGG 245431 |||||| ||||| || || ||||| ||| | ||||||||||||||| |||| || Sbjct 2026809 AAGCAGCTCGACAGTTGAGGTTTGGGCGTGCCAGCGTTGAACAGAGTGGGCGTGGCATGC 2026868 Query 245432 GTAAAGTA 245439 ||||| || Sbjct 2026869 GTAAAATA 2026876 >seq7507 Length=243275 Score = 113 bits (124), Expect = 9e-20 Identities = 583/917 (64%), Gaps = 20/917 (2%) Strand=Plus/Plus Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 |||||| || |||||||| || || || | | ||| || | || || || || || || Sbjct 203731 GGCCAGATTACAGACGGCTACTTCGTCAGGGCTGGAATATTCAACGATTTCAGTACAAAG 203790 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 |||||| |||||||| || ||||| | ||| || ||| ||| ||||| || ||||| Sbjct 203791 GTTACTACACTTGATAGTACCCAGATTCTGTTGGTTGCTCTTTCTATTGCAAGCATCCTT 203850 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 ||||||||||| || ||||| || || || | | || | | ||| || | Sbjct 203851 ATAGAGCATGAAAGGATTACCGGTTTCAGTTTGAGCCTCCAAGATGGCATACCAAAGCTT 203910 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 ||||||| || | ||| |||| || ||| || | ||| || || Sbjct 203911 TTGTGCCTTGATGGTTTCTCTAGCTCTGCCTTCACGCTCATACTGTTCAAACAAGGTCTT 203970 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCC 244985 ||| || |||||| || || |||||| || | || ||| || | |||| || Sbjct 203971 GAATTCATCGCCCCACACTTCACATAGGCC-AGGAGCCTCGTTGGGACAGAAGAGAGACC 204029 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 |||| ||| || |||| | || ||| ||||| || || | ||| || || | || | Sbjct 204030 ACTCACCGTTATCTCTGACTCGCTCCATAAAGAGATCAGGCACCCAAAGAGCATAAAACA 204089 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 || | || || |||||| ||| ||| || | || |||| || || | Sbjct 204090 AATCGCGGGCTCTAATTTCGTCCTTACCAAAGTTTTTGCGGAGATCCAGGAACATGAATA 204149 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 || | |||||||| |||| || | |||| ||||| || ||||| || || || | Sbjct 204150 TATCAGCATGCCAGGGTTCCAGATACATGGCGAAAGCGCCAGGACGCTTATTACCACCTT 204209 Query 245166 GGTCCACCATCCTCTCGAG-CGCGTTG---AAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 | || | | | || | || |||| || | ||||| | |||| | ||| ||| Sbjct 204210 GATCGA----CATAGCGGGCCGTGTTGTTAAACACACGCAGCATGGGCAAGAGGCCATTA 204265 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATG 245281 |||| ||||||||| || ||||| | || | | | || ||| || || | Sbjct 204266 GAGTAGCCGTTGGTACCAGCAATGTAAGAACCAGTAGCACGGACATTGTGAATATTCAAG 204325 Query 245282 CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCC 245341 || | || || || ||| || || | || ||| |||||| ||| || || || Sbjct 204326 CCGATGCCACCAGCCGTCTTTGAAATTTGAGCACAGATCTTGAGGGTTTCGTAGATACCT 204385 Query 245342 TCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTG-GGGCTTGGGGCT 245400 || || |||| |||||| | | || || || |||||||| || |||| || | | Sbjct 204386 TCGATCGAGTCCTCTTTCATGGTCAACAAGAAACAAGAGGACAGTTGTGGGCGAGGAG-T 204444 Query 245401 GCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGT 245459 || | ||||||| ||||| ||||| || || || || | |||| || | | || Sbjct 204445 GCCAGCATTGAACAAGGTGGGACTGGCATGTGTGAAATAAC-GCTCTGACATTAGGTTGT 204503 Query 245460 ACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGG 245519 |||| | | ||||||||| | | ||| ||||| | ||| | ||||| Sbjct 204504 ACGTTTCTATGGCAGCGTCGATATCTTGGCCATGGATACCAACAGCGACACGCATGATCA 204563 Query 245520 TGTGCTGGGGCGTCTCGATGGGTCCCTCGG-GTC--CCTTGAGCATGTAGGAGCGCTCGA 245576 ||||| || |||| || | | | || ||| ||||||| ||| |||||||| | Sbjct 204564 AATGCTGAGGTCTCTC---GGCTACTTTGGAGTCGATTTTGAGCAAGTACGAGCGCTCCA 204620 Query 245577 GCGTCTTGAACCCAAAG 245593 |||||||| |||||| Sbjct 204621 ATGTCTTGAAGCCAAAG 204637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944154617099120