Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq13988 136 3e-27 >seq13988 Length=264055 Score = 136 bits (150), Expect = 3e-27 Identities = 388/592 (66%), Gaps = 31/592 (5%) Strand=Plus/Minus Query 20177 TCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGG-TCT 20235 |||||||| | ||| | |||| ||| |||| || || || ||||| || || || Sbjct 240018 TCTATATGATCTACGTACACATGGGTATCACCCATGGTATGTATGAACTCTCCAGGATCC 239959 Query 20236 AAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGG 20295 ||| | || |||||||||| |||| ||| || |||| ||| || ||||| || || || Sbjct 239958 AAGTCT-GTGACATGAGCAATCATACGAGTCAATAGGGCATAACTTGCAATATTGAATGG 239900 Query 20296 AACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCA-------- 20347 ||| |||| ||||| || | || |||||||||| |||||| || | | Sbjct 239899 AACGCCCAGGCCCATATCGCAAGATCTCTGATACAAAACACAGGACAGTTTAGCGCGGCT 239840 Query 20348 -CCGTCAGCT------------ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGC 20394 |||||||| |||||||||||||| || ||||| ||||| | || Sbjct 239839 ACCGTCAGCAGGAGGAGTACTGACATAAAATTGACAGAAAGCATGACAAGGCGGTAAAGC 239780 Query 20395 CATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATT 20454 ||| | | ||| || || ||||| || | || |||||| | | |||| ||||| Sbjct 239779 CATGCTGGGGATGTCTGCAGGATTCCAAGCGCTCAAAATGATACGGCGATCGGTGGGATT 239720 Query 20455 ATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGC 20514 ||| || || || | || | || ||| |||| || || ||||||||||| | Sbjct 239719 ATTCTTGATCTTTTCAATTATCTCTTGCAGTTGATCAACGCCTTGCCCTGTATAGTCTGT 239660 Query 20515 ATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAA 20574 || || || || || || ||||| | ||| || ||||| || || || ||||| Sbjct 239659 GTCGCAATCAACATATTTGGCACCGAAGTGGCGCCATTGAAAACCATACACTGGCCCCAA 239600 Query 20575 ATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTT 20634 ||| || || | | || | || || || ||||| | || | ||||||||| Sbjct 239599 ATCACCTTCTTTGCGATGTGTCAAACCAAGCTTATCCAGGTATTCGCGGGAGCCATTGCC 239540 Query 20635 GTCCCATATCTTGAC-TCCTGTT--CTTGAAAGCTCCCTGGAGTCAGTA-CTCCCCTTCA 20690 ||||| || ||||| | ||| ||| || ||| |||| | |||| |||| | | Sbjct 239539 ATCCCAGATTTTGACATTACGTTCGCTTAAATGCT---TGGAATTAGTATCTCCAC-GAA 239484 Query 20691 GAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGT 20742 |||||| || | || | ||||| |||| |||||| |||||||| || Sbjct 239483 CAAACCACAGTAATTCCTCGACTACACCTCTGTGAAACACACGCTTTGTAGT 239432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441286528169080