Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq513 132 1e-25 seq2806 123 6e-23 seq15377 113 1e-19 seq14752 104 6e-17 seq11881 100 7e-16 seq2291 95.1 3e-14 >seq513 Length=239887 Score = 132 bits (146), Expect = 1e-25 Identities = 172/234 (74%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | |||||| | ||||| || ||| || |||||||| ||||| Sbjct 208531 TGACCACCACGAAGACGAAGTACCAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCT 208472 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || || ||||||||||| || || ||||| || ||||| ||||| ||| Sbjct 208471 GAAAGAGTACGACCATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTG---GTCT 208415 Query 288364 GGG---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 ||| || ||||| || || ||||| ||| || || || || || || |||| | || Sbjct 208414 GGGGGAATGCCTTCCTTGTCTTGGATCTTTTGC-TTGACATTATCAATCATATCGGTAGA 208356 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||| | ||| || || || || || ||||| |||||||| |||||||| Sbjct 208355 TTCAACTTCTAACGTAATAGTTTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 208302 Score = 120 bits (132), Expect = 7e-22 Identities = 176/244 (72%), Gaps = 9/244 (4%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | |||| || ||| ||||| || |||||||| Sbjct 208300 CCACCACGGAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAA 208241 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||||||||| || || ||||| || ||||| ||||| |||||| Sbjct 208240 AGAGTACGACCATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTG---GTCTGGG 208184 Query 288367 ---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||| || || ||||| ||| || || || || || || | ||| | ||||| Sbjct 208183 GGAATACCTTCCTTGTCTTGGATCTTTTGC-TTGACATTATCAATCGTATCAGTGGATTC 208125 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATT 288482 ||||| | || || ||||| || || |||||||| ||||| || |||| ||| | ||| Sbjct 208124 AACTTCTAATGTAATGGTCTTGCCAGTAAGAGTCTTAACGAAGATTTGCA-TATTTGATT 208066 Query 288483 CTAA 288486 ||| Sbjct 208065 GTAA 208062 Score = 96.9 bits (106), Expect = 8e-15 Identities = 117/158 (74%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 288319 TCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCT 288375 ||||||||||| || || ||||| || ||||| ||||| |||||| || ||||| Sbjct 203262 TCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGG---TCTGGGGGAATACCTTCC 203206 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 ||||| || ||||| || || || || || |||| | ||||| ||||| | || Sbjct 203205 TTATCTTGAATTTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTA 203146 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||||||||| |||||||| Sbjct 203145 ATAGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 203108 >seq2806 Length=81310 Score = 123 bits (136), Expect = 6e-23 Identities = 366/559 (65%), Gaps = 14/559 (3%) Strand=Plus/Plus Query 72218 TCATGGAGATCTGACCGATTCGTCTAGTTTGATTCATATAATCACCAAGATTCGTCCGGA 72277 ||| || ||| | || ||||| || || | ||||||| ||| | || ||| || Sbjct 10308 TCACGGCGATTTAACTGATTCCACTTGTCTCGTTCATATTATCTCTCAGGTTCAACCTAC 10367 Query 72278 CGAAATCTACAATTTGGCCGCACAATCGTTTGTTCATGATAGTTTTAATCAAGCCGAGGT 72337 |||| | ||||| ||||| || ||||| ||| | | ||| || | || Sbjct 10368 CGAAGTTTACAACTTGGCTGCTCAATCTCATGTCAAGGTCTCATTTGATATGTCTGAATA 10427 Query 72338 GACTGCAAACGTAGATGCTCTCGGTGTTTTGCGTTTACTAGACGCCGTTCGTATATCGGG 72397 |||| | || |||||||||||| | | ||| | |||| || | |||| | || Sbjct 10428 CACTGGTGATGTCGATGCTCTCGGTACTCTCCGTCTTTTAGATGCTATCCGTACTTGCGG 10487 Query 72398 T----GTCAACT--CTCGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCA 72451 | || | | |||| | | || || ||| | || || | ||||| ||||| Sbjct 10488 TTTGAGTGATCGTGCTCGTTTCTATCAGGCTTCTACCTCTGAACTTTATGGCAAAGTCGT 10547 Query 72452 AGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAA 72511 || | ||||| | |||| ||| || ||||||||||| || |||||||| || || Sbjct 10548 TGAGACCCCTCAAAAAGAAACTACGCCTTTTTATCCTCGTTCTCCCTACGGTGTGGCTAA 10607 Query 72512 GTTGTACGCTTATTGGAT--CTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGC 72569 | |||| ||| ||||| |||| ||||| || || || ||||||||||||| || Sbjct 10608 ACTTTACGGTTACTGGATTACTGT--CAATTATCGCGAATCATATAACATGTATGCCTGT 10665 Query 72570 AACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAA 72629 || ||| ||||| ||||| ||||| | |||| || || ||||||||| Sbjct 10666 AATGGTATTCTGTTCAACCACGAAAGTCCTCGTCGTGGCCGCACTTTTGTCACTCGTAAA 10725 Query 72630 ATCACGAAGGTGGTCGCGAATATTTTCAATGGTGTCG--AAAAATGCATGTATCTCGGTA 72687 ||||| | || || ||| | || | |||| || |||| | ||||| |||| Sbjct 10726 ATCACTCGTGCTGTTGCTGATA--TCCATTTAGGTCGTCAAGAATGTCTTTATCTTGGTA 10783 Query 72688 ATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGA 72747 | || ||||| || | ||||||||| | || ||||| | || | |||||| | | Sbjct 10784 ACATTGATGCTAAGCGTGATTGGGGACACGCTCGTGATTATATTGAGGGTATGTGGCTCA 10843 Query 72748 TGCTGCAACAAGATACTCC 72766 |||| |||||||||||||| Sbjct 10844 TGCTTCAACAAGATACTCC 10862 >seq15377 Length=116332 Score = 113 bits (124), Expect = 1e-19 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || ||||||| ||| ||| || || || || ||||| | Sbjct 81296 CCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCTGAC 81237 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||| ||||||||||||||||| || || ||||||| ||| || || ||||| Sbjct 81236 AACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGG---TCTGGA 81180 Query 288367 ---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || |||||||| || ||||| ||| |||| || || || || ||| ||||| Sbjct 81179 GGAATACCTTCTTTGTCTTGGATCTTTTGCTTG-ACATTATCAATTCTGTCGGATGATTC 81121 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || | ||||| || || || || || ||||||||||| || ||||| Sbjct 81120 TACCTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 81070 >seq14752 Length=160396 Score = 104 bits (114), Expect = 6e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209 ||||||||||||||| || || ||| ||| || ||||||| || ||||||||| | Sbjct 135823 TGATCGGTATGAATGATGAACTAATGTGTCAGTACGTCGAATTTGTTGCTGATCGTCTGA 135882 Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269 | | || |||| || || ||| |||||||| | |||||||| Sbjct 135883 TGGTTTCTCTTGGTTTCCCCAAGCACTATAATGTTTCTAATCCCTTTGATTTTATGGATT 135942 Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTC 269329 | ||||| || |||||||||| |||||||| ||||||||||| || || |||||| Sbjct 135943 TGATTTCCCTTCAAGGAAAGACAAACTTCTTTGAAAAGCGTGTTTCTGATTACCAACGTG 136002 Query 269330 CTGGTGTAATGAATCCAGAAGA 269351 ||||||| |||||| || |||| Sbjct 136003 CTGGTGTTATGAATGCAAAAGA 136024 >seq11881 Length=132943 Score = 100 bits (110), Expect = 7e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTC-TATGATCGGTATGAATGCCGATCTCATG 269175 |||| ||| | ||||||| | || |||| | | || || ||||| ||| | |||||| Sbjct 44753 AAGAATTCTTGACTGACGCTTTGCC-TGTTAATCTTATTGGCATGAACGCCAACCTCATG 44695 Query 269176 AATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTG 269235 ||||| || ||||| || ||||| | || | || ||||| | || ||| | Sbjct 44694 TGCCAATACATTGAATTTGTTGCTGACAGACTCATGGTCGCCCTCGGCTTCGATAAAATT 44635 Query 269236 TACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAAC 269295 |||||| | || ||||| | || ||||| | |||||||| |||||||||| || Sbjct 44634 TACAATGCCTCTAACCCCTTTGATTTCATGGACATGATTTCGCTTCAAGGAAAGACCAAT 44575 Query 269296 TTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATGAA 269342 ||||| || || |||||| ||||||||||| |||| || ||||| Sbjct 44574 TTCTTTGAGAAACGTGTCTCTGACTATCAACGCGCTGGCGTTATGAA 44528 >seq2291 Length=180 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/183 (73%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 288295 TTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGT 288354 || ||||| | | || ||| ||||||||||||||||| || || ||||||| ||| || Sbjct 180 TTGTAGTCTGACAACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGC 121 Query 288355 TGAGAATCTGGG---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGA 288410 || ||||| || |||||||| || ||||| ||| |||| || || || || Sbjct 120 TGG---TCTGGAGGAATACCTTCTTTGTCTTGGATCTTTTGCTTG-ACATTATCAATTCT 65 Query 288411 ATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTG 288470 ||| |||||||| || | ||||| || || || || || ||||||||||| || || Sbjct 64 GTCGGATGATTCTACCTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTG 5 Query 288471 CAT 288473 ||| Sbjct 4 CAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179418057346886