Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq15377 93.3 5e-14 seq513 89.7 6e-13 seq3986 86.0 7e-12 seq8594 84.2 2e-11 >seq15377 Length=116332 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||||| ||| | ||| | ||| | || ||||| ||||| ||||| || | Sbjct 81297 ACCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCTGA 81238 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || | ||| |||| |||| || ||||| || || || | || |||||||| | || Sbjct 81237 CAACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGG 81178 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || ||||| ||| ||||| |||| | | | ||||| ||||| || Sbjct 81177 AATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTAC 81118 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | |||||||||||||| || || ||||| || || |||||||| || Sbjct 81117 CTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATATT 81067 >seq513 Length=239887 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| || || || ||||| || | || |||| ||||| || ||||| Sbjct 208264 TCCTTTTGAATGTTATAGTCTAAAAGAGTACGACCATCTTCTAATTGCTTGCCGGCGAAA 208205 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || || || ||||| | || | | |||||||| ||| ||||| |||| | Sbjct 208204 ATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGGATCTTTTGCTTGACATTA 208145 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||| || | ||||| || || | || ||||| ||||| || || ||||| || Sbjct 208144 TCAATCGTATCAGTGGATTCAACTTCTAATGTAATGGTCTTGCCAGTAAGAGTCTTAACG 208085 Query 42198 AAGATTTGCATTTT 42211 ||||||||||| || Sbjct 208084 AAGATTTGCATATT 208071 >seq3986 Length=322 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/81 (84%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| ||| | ||| |||||| ||||||||||||||||||||| |||| Sbjct 139 AAAAAATCTCTCC--GGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 82 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||||||| || Sbjct 81 TTACCACTATACTACCGAAGA 61 >seq8594 Length=211578 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| ||| |||| | ||| |||||| ||||||||||||||||||||| |||| Sbjct 211176 AAAAATAAACTCTCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 211235 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||||||| || Sbjct 211236 TTACCACTATACTACCGAAGA 211256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543106622268080