Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq15377 141 9e-29 seq7507 129 6e-25 seq513 129 6e-25 seq2291 98.7 1e-15 >seq15377 Length=116332 Score = 141 bits (156), Expect = 9e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||||||||||| ||| ||||| || ||||||||||| |||| | | |||| |||| Sbjct 81282 AAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCTGACAACGAGCGCCCGTC 81223 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || |||||| | || | || |||||||| |||||||| |||||||| || Sbjct 81222 TTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTC 81163 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || |||||||| ||| || | | | || | || || || | ||| | ||| Sbjct 81162 TTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTGATGGT 81103 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| || | || || |||||||||||||| || Sbjct 81102 TTTGCCAGTAAGTGTCTTGACGAAAATTTGCATATT 81067 >seq7507 Length=243275 Score = 129 bits (142), Expect = 6e-25 Identities = 374/573 (65%), Gaps = 16/573 (3%) Strand=Plus/Plus Query 153675 TCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCGGTT 153734 |||||||||||| ||| ||||| | || || ||| || | ||||||||| || || Sbjct 202814 TCCACGGTAAATTTGATGGCATCGACAGCAGGGCGAGTGCGAAGATAATACATACCAGTC 202873 Query 153735 TTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGCTGC 153794 |||||||| || |||| | | ||||| ||||||||| | ||| | |||| Sbjct 202874 TTCAAACCCTTTTGCCAACCATAAAAGTGCATACTAGTTAATTTGCCAAAATTAGGCTCT 202933 Query 153795 GCTATAAACACGTTAAACGAC--TGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCA 153852 | ||||| | ||| | ||| || ||||||||||| ||||| || ||||| || |||| Sbjct 202934 CCAATAAAGATGTTCA--GACTTTGACTCTGATCGATAAAAGCACCACGATCAGCAGCCA 202991 Query 153853 TGTCAATCAAGTTTTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGT 153912 | |||| |||| | ||||| ||||| |||||||| || | | | || | | | Sbjct 202992 TATCAACCAAGGTACGCTGGCTCAGCTCCCAGACAGTTTTATACATGTCCTTCAACTTTT 203051 Query 153913 CGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCATGT 153972 || |||| | || || || | | ||| || | | || || || |||| Sbjct 203052 GAGGGATGCCAGGGATGTTTTGGATAGAGCCACCATCAGACATGATCATGTTCTTGATGT 203111 Query 153973 GGTCGTCGTACAA------ATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTA 154026 |||| | ||| |||| | | | || || |||||||| |||| | | Sbjct 203112 CCTCGT--TCCAAAGACCCATTTCGACCAAATCCTTCAGCAACCAAG----GGTTTACAA 203165 Query 154027 CTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACG 154086 ||| || || || || | || || || |||||| || ||| | ||||| || Sbjct 203166 TTTGGAATTCACCAGCAAGAACACGTCGGGTATACAAGTTTGATGTGTAGGGCTCAAAGC 203225 Query 154087 ATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAG 154146 |||||||| ||| | ||||||| || | || || |||||| || | ||| | | Sbjct 203226 ATTCGTTGAAGCCCATGATTTGAGAGGTTGAGGCAGTAGGCATAGGAGCAAGCAAGAGGG 203285 Query 154147 AGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGG 154206 |||| || | ||||| |||||||| ||| || |||||||| ||| | | Sbjct 203286 AGTTACGGACGCCGTGATTTGCAATCTTTTCTTTCAAGGATGCCCAATCCCAAAGAGAAG 203345 Query 154207 TAGGTTGCACGTTCCACATGTCGTATTGCAAAA 154239 ||||| || ||||||||||||||||||| || Sbjct 203346 TAGGTGTGACATTCCACATGTCGTATTGCAGAA 203378 Score = 100 bits (110), Expect = 3e-16 Identities = 189/273 (69%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 155156 AGCACGCGCTTTATGAACATTAACGCCCAAACCTCC-GCCGTATTTAGATATTTGCGCAC 155214 |||||| | || |||| ||| | ||| | || || ||||| ||| || ||||| |||| Sbjct 204301 AGCACGGACATTGTGAATATTCAAGCCGATGCCACCAGCCGTCTTT-GAAATTTGAGCAC 204359 Query 155215 AGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAAC 155274 || | | |||||||| || |||| ||| ||| ||||||| ||||||||||||| Sbjct 204360 AGATCTTGAGGGTTTCGTAGATACCTTCGATCGAGTCCTCTTTCATGGTCAACAAGAAAC 204419 Query 155275 ACGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAA 155334 | || || | ||| || |||| ||| || || || || ||||| || ||||| | Sbjct 204420 AAGAGGACAGTTGTGGGCGAGGAGTGCCAGCATTGAACAAGGTGGGACTGGCATGTGTGA 204479 Query 155335 ACATTTTG-TTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGT 155393 | || | | | ||| |||||| ||||| ||||| ||||| || || | || || Sbjct 204480 A-ATAACGCTCTGACATTAGGTTGTACGTTTCTATGGCAGCGTCGATATCTTGGCCATGG 204538 Query 155394 ATACCGATCGCCACGCGCATCAGCATGTGTTGA 155426 ||||| | || || ||||| | || || ||| Sbjct 204539 ATACCAACAGCGACACGCATGATCAAATGCTGA 204571 >seq513 Length=239887 Score = 129 bits (142), Expect = 6e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||||||||| || ||| | || || | ||||| | ||| Sbjct 208276 TGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAAAGAGTACGACCATCTTCTAATTGC 208217 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 |||||||| |||| || || || ||||| || ||||| ||||| || ||||| || ||| Sbjct 208216 TTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGGATCTTT 208157 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||||| ||| || | |||||| || || ||||||| || | ||||||||| || Sbjct 208156 TGCTTGACATTATCAATCGTATCAGTGGATTCAACTTCTAATGTAATGGTCTTGCCAGTA 208097 Query 64421 AAAGTTTTTACGAAAATTTGCATTTT 64446 | ||| || ||||| |||||||| || Sbjct 208096 AGAGTCTTAACGAAGATTTGCATATT 208071 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || ||||| || || || ||||| |||| | || || | || Sbjct 208514 AAGTACCAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGAAAGAGTACGACCATC 208455 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||||||||| |||| || || || ||||| || ||||| ||||| || || Sbjct 208454 TTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTC 208395 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || |||||||| ||| || | |||| | || ||||||| || | || Sbjct 208394 TTGGATCTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAACGTAATAGT 208335 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | |||||| |||||||| ||||| Sbjct 208334 TTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 208302 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| | ||||||||||| |||| || || || ||||| || ||||| ||||| || Sbjct 203262 TCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTA 203203 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| ||||||||||| ||| || | |||| | || ||||||| || | Sbjct 203202 TCTTGAATTTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTAATA 203143 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || || | ||| || |||||||| ||||| Sbjct 203142 GTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 203108 >seq2291 Length=180 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 64265 TTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGC 64324 ||||| |||| | | |||| ||||||| | || || |||||| | || | || ||| Sbjct 180 TTGTAGTCTGACAACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGC 121 Query 64325 TGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCA 64384 ||||| |||||||| |||||||| ||||| || |||||||| ||| || | | | || Sbjct 120 TGGTCTGGAGGAATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCG 61 Query 64385 CCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || || | ||| | ||| ||||| || | || || |||||||||||||| Sbjct 60 GATGATTCTACCTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499547138178280