Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq513 122 6e-23 seq15377 107 1e-18 seq2291 86.0 4e-12 >seq513 Length=239887 Score = 122 bits (134), Expect = 6e-23 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||| ||||| || ||||| ||||| || || ||| | | | ||||| Sbjct 208283 AACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAAAGAGTACGACCATCTTC 208224 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||| ||||| ||| | || | ||| |||||||| ||||| ||||||||||| Sbjct 208223 TAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTG 208164 Query 15087 AAT--TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||||||| ||| | || || ||||| | ||| || ||||| |||||||| Sbjct 208163 GATCTTTTGCTTG--ACATTATCAATCGTATCAGTGGATTCAACTTCTAATGTAATGGTC 208106 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 || || || ||||| || || || |||||||||||||| Sbjct 208105 TTGCCAGTAAGAGTCTTAACGAAGATTTGCATATTTGA 208068 Score = 120 bits (132), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| ||||| || || || || ||||| || ||| | | | |||||| Sbjct 208510 ACCAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGAAAGAGTACGACCATCTTCT 208451 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC--AC 15085 ||||| ||||| ||| | || | ||| |||||||| ||||| ||||||||||| Sbjct 208450 AATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 208391 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 | |||||| || ||| | || || ||||| || ||| || ||||| ||||| |||| Sbjct 208390 ATCTTTTGC--TTGACATTATCAATCATATCGGTAGATTCAACTTCTAACGTAATAGTTT 208333 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || |||||||| || ||||| |||||| Sbjct 208332 TGCCAGTAAGAGTTTTGACGAAAATCTGCATA 208301 Score = 105 bits (116), Expect = 5e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||||||||| ||||| ||| | || | ||| |||||||| ||||| |||||||| Sbjct 203262 TCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTA 203203 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || |||||| || ||| | || || ||||| || ||| || ||||| ||||| Sbjct 203202 TCTTGAATTTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTAATA 203143 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||||| || ||||| || || ||||| |||||| Sbjct 203142 GTTTTACCAGTAAGAGTCTTGACGAAAATCTGCATA 203107 >seq15377 Length=116332 Score = 107 bits (118), Expect = 1e-18 Identities = 157/218 (72%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGC--GTCTT 15025 |||| |||||| || || || || || |||||||| || ||| || ||| ||||| Sbjct 81278 ACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTC--TGACAACGAGCGCCCGTCTT 81221 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 |||||||||| || || | |||||||| || ||||| ||||| ||||| ||||| Sbjct 81220 CTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTT 81161 Query 15086 AAAT--TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || ||||||| ||| | || || | ||| |||||| || || || ||||| Sbjct 81160 GGATCTTTTGCTTG--ACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTGATGGT 81103 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 ||| || || || || || || |||||||||||||||| Sbjct 81102 TTTGCCAGTAAGTGTCTTGACGAAAATTTGCATATTTG 81065 >seq2291 Length=180 Score = 86.0 bits (94), Expect = 4e-12 Identities = 116/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 15020 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCT 15079 |||||||||||||||| || || | |||||||| || ||||| ||||| ||||| | Sbjct 158 CGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTT 99 Query 15080 TGTC--ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGT 15137 |||| | |||||| || ||| | || || | ||| |||||| || || || Sbjct 98 TGTCTTGGATCTTTTGC--TTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGT 41 Query 15138 AATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||||| || || || || || || |||||||||||| Sbjct 40 GATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357323889684545