Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq15377 116 3e-21 seq513 109 5e-19 seq2291 104 2e-17 >seq15377 Length=116332 Score = 116 bits (128), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCG 45188 ||||||||| |||||||||||||| || || || || || |||| | || Sbjct 81279 CACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTC--TGACAACGAGCGCCCGTCT 81222 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || |||||||| || || | ||||| ||||||||||| || ||||| |||||||| ||| Sbjct 81221 TCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCT 81162 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || || ||||| |||| || | ||||||| || || || || | ||| | ||| Sbjct 81161 TGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTGATGGTT 81102 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || || ||||||||||| Sbjct 81101 TTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 81070 >seq513 Length=239887 Score = 109 bits (120), Expect = 5e-19 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAAT 45194 ||| || || |||||||| |||||||| || || ||| | | || ||| || ||| Sbjct 208505 ATGAAGAGTAGATTCCTTCTGGATATTGTAGTC--TGAAAGAGTACGACCATCTTCTAAT 208448 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | ||||| ||||| || ||||||||||| || ||||| || Sbjct 208447 TGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATC 208388 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 ||||| |||| || | | |||| ||| || ||||| | |||| |||||||| Sbjct 208387 TTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAACGTAATAGTTTTGCCA 208328 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| || ||||| ||||| Sbjct 208327 GTAAGAGTTTTGACGAAAATCTGCAT 208302 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || ||||| || || ||| | || | ||||| ||||| || ||||| ||||| || Sbjct 203263 ATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTT 203204 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||||||||||||| |||| || | | |||| ||| || ||||| | |||| Sbjct 203203 ATCTTGAATTTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTAAT 203144 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || ||||| || || ||||| ||||| Sbjct 203143 AGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 203108 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || ||||| || | || | ||| || ||||| Sbjct 208276 TGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAAAGAGTACGACCATCTTCTAATTGC 208217 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | ||||| ||||| || ||||| ||||| || ||||| || ||| Sbjct 208216 TTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGGATCTTT 208157 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || |||| || | || || | || || ||||| | |||| || ||||| || Sbjct 208156 TGCTTGACATTATCAATCGTATCAGTGGATTCAACTTCTAATGTAATGGTCTTGCCAGTA 208097 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || |||||||| Sbjct 208096 AGAGTCTTAACGAAGATTTGCAT 208074 >seq2291 Length=180 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||| || || | ||||| ||||||||||| || ||||| |||||||| Sbjct 156 TCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTG 97 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| || ||||| |||| || | ||||||| || || || || | ||| | Sbjct 96 TCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTGATG 37 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || || || || || ||||||||||| Sbjct 36 GTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451914850324520