Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq513 107 2e-18 seq15377 104 3e-17 seq2291 84.2 2e-11 >seq513 Length=239887 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| ||||| |||||||||||||| || ||||| || | || || Sbjct 208510 ACCAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGAAAGAGTACGACCATCTTCT 208451 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||||||||||| || | || || ||||| | || | || |||||||| | Sbjct 208450 AATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 208391 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| | ||||| | | | | | ||| | ||||| || || | ||| || |||||| Sbjct 208390 ATCTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAACGTAATAGTTTTG 208331 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||| || || || ||||| Sbjct 208330 CCAGTAAGAGTTTTGACGAAAATCTGCAT 208302 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || || ||||| | ||||| || | || || | |||||||||||||| Sbjct 208264 TCCTTTTGAATGTTATAGTCTAAAAGAGTACGACCATCTTCTAATTGCTTGCCGGCGAAA 208205 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || ||||| | || | | |||||||| |||||| | ||||| | Sbjct 208204 ATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGGATCTTTTGCTTGACATTA 208145 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||| || | ||||| || || | || ||||| ||||| || || || ||||| Sbjct 208144 TCAATCGTATCAGTGGATTCAACTTCTAATGTAATGGTCTTGCCAGTAAGAGTCTTAACG 208085 Query 46583 AAGATTTGCATTTT 46596 ||||||||||| || Sbjct 208084 AAGATTTGCATATT 208071 >seq15377 Length=116332 Score = 104 bits (114), Expect = 3e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||||| ||| | ||| ||||| | || ||||| || || |||||||| || Sbjct 81296 CCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCTGAC 81237 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | | |||| |||| || | || || ||||| || ||||| || |||||||| | || Sbjct 81236 AACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGA 81177 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| | ||||| | | | ||||| ||||| || Sbjct 81176 ATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACC 81117 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||| |||||||||||||| || || || || || || |||||||| || Sbjct 81116 TCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATATT 81067 >seq2291 Length=180 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 46415 TTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGC 46474 |||||||| || | | |||| |||| || | || || ||||| || ||||| || ||| Sbjct 180 TTGTAGTCTGACAACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGC 121 Query 46475 TGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCG 46534 ||||| | || | | || ||||| |||||| | ||||| | | | ||||| Sbjct 120 TGGTCTGGAGGAATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCG 61 Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || |||| |||||||||||||| || || || || || || |||||||| Sbjct 60 GATGATTCTACCTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565127917089240