Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq14752 138 1e-27 seq11881 120 3e-22 seq15377 111 2e-19 >seq14752 Length=160396 Score = 138 bits (152), Expect = 1e-27 Identities = 387/578 (67%), Gaps = 22/578 (4%) Strand=Plus/Minus Query 132930 AATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATAT 132989 ||||| || ||| || |||||| || ||||| | || || |||||||||||||| || Sbjct 135674 AATGAACTCATTGGAGAGAGTCAAACCAGGCATTAAACCACGCTTTTTGAGCCAAAAGAT 135615 Query 132990 GGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC-AGGCGCT 133048 | ||| || ||| ||||||||||| || |||| || |||| ||| | || Sbjct 135614 AGAGGCAAACGAGCCTGAAAAGAAGACACCTTCGATAATAGC-AAAGGCACAGATACGTA 135556 Query 133049 CGCCGAACG--TGGCTTCTTT-GCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTT 133105 || |||| | ||| | || | |||||||||| | ||||| || ||||| | Sbjct 135555 CGGCGAAAGGTTGGTTGGATTCGTTGGCGATCCATTTGAAAGCCCAATCAGCCTTGGTCT 135496 Query 133106 TGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCA 133165 ||| || || || || ||||| || |||||| | || || ||| || | | Sbjct 135495 TGATTTGAGGAATAGTCTCTATGGCATTAAACAAA---AATTCCTTTTCAACGGGATCCT 135439 Query 133166 CG---TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTT 133222 | || || ||||| | || |||||||| ||||| | |||||| || ||| | Sbjct 135438 TGATATACGTATCGATCAATAGGGAGTACATTTCAGAGTGAATGTTCTCAATCATGATCT 135379 Query 133223 GAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCT-CGACC 133281 |||| |||||||| || |||||| | | || ||||| | || ||| | | || Sbjct 135378 GAAAACCGTAAAAACATTTAGCCTCGCCTATCTTAACTTCATC-GCAAAAGTTTGCAACT 135320 Query 133282 AGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAA 133341 | |||||| ||||||||||| || | || ||||| || | || | |||||| Sbjct 135319 AAATTTTCATTGACGATGCCATCCGAAGTTGCAAAAAAAGCTAATACACGGCCGATGAAG 135260 Query 133342 TGGCGCTCGTTGTCGTTCAAGC----GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 ||||| || | | |||| ||| |||||| || | |||| ||||| | || || Sbjct 135259 TGGCGTTCATCCTTGTTC-AGCTTTTCCTCCCAATCAAGTATGTCTTTGGATAAATCAAC 135201 Query 133398 CTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACT-CCACATGTCCGAAT 133456 ||| || || ||||| ||||| || |||||||| ||||| | ||| ||| || || | Sbjct 135200 CTCTTCCACAGTCCAGAACGAAGCTTCGGCTTTCTTGTA-AAACTCCCAAATTTCATGGT 135142 Query 133457 ATTGTAT-GGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 ||| || ||||||| || || ||||| || ||||| Sbjct 135141 ATTTGATAGGGAAAAGGCA-GAATCGGCGAGGATTTTC 135105 Score = 120 bits (132), Expect = 3e-22 Identities = 371/569 (65%), Gaps = 10/569 (2%) Strand=Plus/Minus Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935 |||||| | |||| | ||| |||| || ||| | ||| || || | | ||||| Sbjct 137798 CAAATGATGAAACAAGAGGCATCCAAAATCAGCATGTAGGCCTTCATCACGAGTAATGAA 137739 Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995 ||| || | |||||| || ||||| | || || || ||||||||||| || | ||| Sbjct 137738 TTCATTAGAAAGAGTCAAACCAGGCATTAAACCACGCTTCTTGAGCCAAAAGATAGAGGC 137679 Query 132996 GAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA 133055 || || |||||||||| ||||| || || || ||||| || | || | || || Sbjct 137678 AAACGATCCAGAAAAGAAGATACCCTCCACAGCAGCAAAAGCAACAATACGGACACCAAA 137619 Query 133056 CG--TGGCTT-CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCA 133112 | ||| || || | | |||||| | ||||| | ||||| || || | | Sbjct 137618 AGGTTGGTTTGATTCATTAGAGATCCATTTGAAAGCCCAGTTAGCCTTATCCTTAATGAC 137559 Query 133113 CGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAG 133170 || || ||||||||||| || || || | | | | ||| || | | | ||| Sbjct 137558 AGGAATGGTTTCGATGGCATTAAATAA--GAATTCTTTCTCAATAGAATCTTTAATGTAA 137501 Query 133171 GTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCG 133230 || ||||| | ||| |||||||| ||||| | |||||| || ||| ||||| ||| Sbjct 137500 GTATCGATCAATAGCGAGTACATTTCAGAGTGAATGTTCTCAATCATGATCTGAAAACCG 137441 Query 133231 TAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCG 133290 || |||||| |||||| | |||| ||||| | ||| | |||||||| || Sbjct 137440 TAGAAGCACTTTGCCTCGGCTACCTTGACTTCATCGCAGAAGTTTTTCACCAGATTCTCA 137381 Query 133291 TTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCG 133350 ||||| || || || | || || ||||||| ||| | || || | ||| Sbjct 137380 TTGACAATACCATCAGAAGTAGCAAAGAAGGCCAACACACGAGAAATAAAGAATCTCTCA 137321 Query 133351 TTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACG 133407 | || || | ||||||||| | |||||| ||||| || || |||||| | Sbjct 137320 TCATCATTTAGTTTTTCCTCCCAGTCAATCAAGTCCTTTGACAGATCAACTTCCTCGGCT 137261 Query 133408 GTCCAAAACGACGCCTCGGCTTTTTTGTA 133436 ||||| || || || || |||||||| || Sbjct 137260 GTCCAGAAAGAGGCTTCAGCTTTTTTATA 137232 >seq11881 Length=132943 Score = 120 bits (132), Expect = 3e-22 Identities = 337/513 (66%), Gaps = 11/513 (2%) Strand=Plus/Plus Query 132624 TTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTT 132683 ||||||||| ||||| || ||||| | | ||||| | ||| ||||| |||||||| Sbjct 44563 TTTCTCAAAGAAATTGGTCTTTCCTTGAAGCGAAATCATGTCCATGAAATCAAAGGGGTT 44622 Query 132684 GGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740 | | ||||| || | ||||| || |||| | || ||||| || || || Sbjct 44623 AGAGGCATTGTAAATTTTATCGAAGCCGA---GGGCGACCATGAGTCTGTCAGCAACAAA 44679 Query 132741 CTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTT 132799 || |||||||| ||||| | || || | | | || | ||| || |||| || | Sbjct 44680 TTCAATGTATTGGCACATGAGGTTGGCGTTCATG-CCAATAAGATTAACAGGCAAAGCGT 44738 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 | || | || |||||| || | || || || | || ||| | | || ||| | Sbjct 44739 CAGTCAAGAATTCTTGCTCAATTTCAACAGCCTCTGCGATGATGCTCTTTACACGCTCTT 44798 Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 | || || | || ||| | |||| | || ||||||||| ||| | ||||| Sbjct 44799 GGGAGGGGGTTTTCTTCAGATGGGTAAACAAGAGACAGGCAAAGTCGGTATGAAGGCCCT 44858 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 |||| | || || | ||| || || ||||| || |||||||||||||| || |||| Sbjct 44859 CGTCACGAGAGATCAATTCATTAGAAAAGGTCAACCCAGGCATGAGGCCGCGCTTCTTGA 44918 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 |||| || |||| ||| || ||| || ||||||| || |||||||| || ||||| | Sbjct 44919 GCCAGAAAATGGAGGCAAATGAGCCTGAGAAGAAGATACCTTCGACGGCAGCAAAAGCAA 44978 Query 133040 CCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099 | | | || | || | || |||| | |||||| | ||||| || |||| Sbjct 44979 CTAATCTTTCAGCAAA---AGAATCATTGCCAGAGATCCATTTGAAGGCCCAGTCAGCCT 45035 Query 133100 TTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132 || |||| || || || ||||| ||||||| Sbjct 45036 TTCTCTTGATACAGGGGATGGTTTCAATGGCGT 45068 >seq15377 Length=116332 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| |||||||| ||||| || || || || |||||||||||||| | || || || | Sbjct 81066 AAATATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATC 81125 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 ||||||| | | | | || |||| |||| |||||||| || ||||| | || Sbjct 81126 ATCCGACAGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGA 81185 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || || | || | || || ||||| | || |||| |||| | | ||||| Sbjct 81186 CCAGCAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGGCGCTCGTTGTCAGACTA 81245 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || |||||| | ||||| ||| | ||||| ||| | ||||| || Sbjct 81246 CAACATTCAGAAGGAATCAACGCTTCATCTAGTGCTTCGTCTAAGAGGTGG 81296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500075034974080