Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq513 159 8e-34 seq15377 132 1e-25 seq2291 107 4e-18 seq2679 96.9 8e-15 seq6568 87.8 4e-12 >seq513 Length=239887 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| || || |||||||| || || || |||||| | |||||||| Sbjct 208283 AACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAAAGAGTACGACCATCTTC 208224 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||| || ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct 208223 TAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTG 208164 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || ||||||||||| || ||||| || || | ||| ||||| | |||| ||||| Sbjct 208163 GATCTTTTGCTTGACATTATCAATCGTATCAGTGGATTCAACTTCTAATGTAATGGTCTT 208104 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTT 195148 || || | ||| || ||||| | |||||| | || || Sbjct 208103 GCCAGTAAGAGTCTTAACGAAGATTTGCATATTTGATT 208066 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || || || || |||||||| || | |||||| | |||||||| | ||| Sbjct 208504 TGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGAAAGAGTACGACCATCTTCTAATTGC 208445 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| ||||| |||||||||||||| ||||||||||| |||||||| || ||| Sbjct 208444 TTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTT 208385 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||| || ||||| | || | | ||| ||||| | |||| || || || || Sbjct 208384 TGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAACGTAATAGTTTTGCCAGTA 208325 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||| ||||| | ||||| Sbjct 208324 AGAGTTTTGACGAAAATCTGCAT 208302 Score = 120 bits (132), Expect = 7e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| | ||||| || ||||| ||||| |||||||||||||| ||||| ||||| || Sbjct 203263 ATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTT 203204 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 |||||||||||||||||||| || ||||| | || | | ||| ||||| | |||| Sbjct 203203 ATCTTGAATTTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTAAT 203144 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || | ||| || ||||| | ||||| Sbjct 203143 AGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 203108 >seq15377 Length=116332 Score = 132 bits (146), Expect = 1e-25 Identities = 166/224 (74%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAA-GAGTTCTCCCATCTT 194989 || || ||||| || || || || ||||| ||||| || | ||| ||| | ||| |||| Sbjct 81278 ACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCTGACAACGAG--CGCCCGTCTT 81221 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | | || ||||| || ||||| | ||||| |||||||||||||| ||||||||||||| Sbjct 81220 CTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTT 81161 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | || ||||||||||| || ||||| |||| || ||| || || | || | || | Sbjct 81160 GGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTGATGGTTT 81101 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTG 195153 | || || | || || ||||| | |||||| | || ||||||| Sbjct 81100 TGCCAGTAAGTGTCTTGACGAAAATTTGCATATTTGTTTACTTG 81057 >seq2291 Length=180 Score = 107 bits (118), Expect = 4e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||| ||||| | || ||||| || ||||| | ||||| |||||||||||||| ||||| Sbjct 160 CCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTC 101 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||| || ||||||||||| || ||||| |||| || ||| || || | || Sbjct 100 TTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGT 41 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | || || ||||| | |||||| Sbjct 40 GATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 2 >seq2679 Length=221958 Score = 96.9 bits (106), Expect = 8e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| || ||||| || ||||||||| | | | ||||||||||| || Sbjct 218407 GTGAAGAGTGGATTCCTTTTGGATGTTGTAATCGCTTAAGGAACGGCCATCTTCGAGTTG 218348 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 |||||| ||||| ||||| |||||||||||||| || || ||| Sbjct 218347 CTTACCAGCGAAAATAAGACGTTGTTGGTCTGGGGGGATACCT 218305 >seq6568 Length=250849 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || ||||| ||||||||||| | ||| | |||||||| || || Sbjct 220711 GTGAAGAGTAGATTCCTTTTGGATATTGTAATCACTCAAAGTACGGCCATCTTCAAGTTG 220652 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 |||||| ||||| || || |||||||| || ||||| || ||| Sbjct 220651 CTTACCAGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCT 220609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109259316401579