Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq14752 197 2e-45 seq11881 170 2e-37 >seq14752 Length=160396 Score = 197 bits (218), Expect = 2e-45 Identities = 535/810 (66%), Gaps = 18/810 (2%) Strand=Plus/Minus Query 36899 AACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCCATAAAATCAAA 36958 ||| || |||| || || ||||||||||||| || || || |||||||||||||| Sbjct 135986 AACACGCTTTTCAAAGAAGTTTGTCTTTCCTTGAAGGGAAATCAAATCCATAAAATCAAA 135927 Query 36959 TGGATTAGATGTATTATA----TATAGTACTACATGATAATTCCTTCAGAAGCCTATCCG 37014 |||||||| |||||| | | | || || || || ||||| | ||| | Sbjct 135926 GGGATTAGAAACATTATAGTGCTTGGGGAAACCAAGAGAAA-CCATCAGACG---ATCAG 135871 Query 37015 CAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAA 37074 |||||||||| | ||| | |||||||||||||| || ||||| || | | | || || | Sbjct 135870 CAACAAATTCGACGTACTGACACATTAGTTCATCATTCATACCGATCAATCTAACGGGCA 135811 Query 37075 TTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAACAATAA 37134 ||| |||| | ||| || ||||| || || || | | || | || || | Sbjct 135810 ATGCTTCTTTGAAAAAACTTTGCTCTATCTCGACGGCCTCCGTCAAAATCTGAAGAACAG 135751 Query 37135 CTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCACAATGTA 37194 ||| | | || ||| | | | | || || | ||| |||||||| ||| | Sbjct 135750 TTTCATGGGAAGGTTGATTAATCATGTGGTGGAATAAAAGACAGCCAAAATCAGCATGAA 135691 Query 37195 AACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCttt 37254 ||||||||| | | | || || ||||| || | || || || ||||||||||| | | Sbjct 135690 GACCTTCATCACGAGTAATGAACTCATTGGAGAGAGTCAAACCAGGCATTAAACCACGCT 135631 Query 37255 ttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAA 37314 |||| | |||||| || | ||||| || || |||||||| | |||||| | |||| Sbjct 135630 TTTTGAGCCAAAAGATAGAGGCAAACGAGCCTGAAAAGAAGACACCTTCGATAATAGCAA 135571 Query 37315 ATGCTACA-AGACGTGTACCGAAAGTTGAACTATAATCA---GAAATCCAtttttttGTC 37370 | || ||| | |||| |||||| | | | || | |||||||| | | Sbjct 135570 AGGC-ACAGATACGTACGGCGAAAGGTTGGTTGGATTCGTTGGCGATCCATTTGAAAGCC 135512 Query 37371 CAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttt 37430 ||||| ||||| || | ||| || || || || || || | ||| | ||| Sbjct 135511 CAATCAGCCTTGGTCTTGATTTGAGGAATAGTCTCTATGGCATTAAACAAAAATTCCTTT 135452 Query 37431 tCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTT 37490 || | ||| | ||||| ||||| || | || ||||||||||||||||| || Sbjct 135451 TCAACGGGATCCTTGATATACGTATCGATCAATAGGGAGTACATTTCAGAGTGAATGTTC 135392 Query 37491 TCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAA 37550 ||||| ||||||||||| |||||||| |||| || || | ||| || | || Sbjct 135391 TCAATCATGATCTGAAAACCGTAAAAACATTTAGCCTCGCCTATCTTAACTTCATCGCAA 135332 Query 37551 AACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACA 37610 || | | |||| |||||||| || || ||||| || |||||| ||||| | ||| Sbjct 135331 AAGTTTGCAACTAAATTTTCATTGACGATGCCATCCGAAGTTGCAAAAAAAGCTAATACA 135272 Query 37611 TATTTTATAAAATGTCTTTCATCATTTGATAA--TTTT--TTCCAATCATTAATATCTTT 37666 || || || | |||||| ||| | | |||| | ||||||| || ||||| Sbjct 135271 CGGCCGATGAAGTGGCGTTCATC-CTTGTTCAGCTTTTCCTCCCAATCAAGTATGTCTTT 135213 Query 37667 TGATAAATCAACTTCATCAACGGTCCAAAA 37696 ||||||||||| || || || ||||| || Sbjct 135212 GGATAAATCAACCTCTTCCACAGTCCAGAA 135183 Score = 187 bits (206), Expect = 3e-42 Identities = 374/547 (68%), Gaps = 8/547 (1%) Strand=Plus/Minus Query 37158 AAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAAT 37217 |||| | |||||| | ||| |||||||| ||||| |||||||| | | | || ||| Sbjct 137797 AAATGATGAAACAAGAGGCATCCAAAATCAGCATGTAGGCCTTCATCACGAGTAATGAAT 137738 Query 37218 TCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA 37277 |||||||||| || || || ||||||||||| | || || | |||||| || | ||| Sbjct 137737 TCATTAGAAAGAGTCAAACCAGGCATTAAACCACGCTTCTTGAGCCAAAAGATAGAGGCA 137678 Query 37278 AAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAA 37337 || |||||||||||||| ||||| || || || ||||| || |||| ||| ||| ||| Sbjct 137677 AACGATCCAGAAAAGAAGATACCCTCCACAGCAGCAAAAGCAACAATACGGACACCAAAA 137618 Query 37338 -GTTGAACT--ATAATCAGAAATCCAtttttttGTCCAATCTGCCTT-TAATTTAACACA 37393 |||| | | || ||| |||||||| | ||| | ||||| | || | ||| Sbjct 137617 GGTTGGTTTGATTCATTAGAGATCCATTTGAAAGCCCAGTTAGCCTTATCCTTAATGACA 137558 Query 37394 TTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGT 37453 ||| ||||| || || || || | || | ||| || | |||| | || ||||| Sbjct 137557 -GGAATGGTTTCGATGGCATTAAATAAGAATTCTTTCTCAATAGAATCTTTAATGTAAGT 137499 Query 37454 ATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATA 37513 ||| || | || ||||||||||||||||| || ||||| ||||||||||| || Sbjct 137498 ATCGATCAATAGCGAGTACATTTCAGAGTGAATGTTCTCAATCATGATCTGAAAACCGTA 137439 Query 37514 AAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATT 37573 || ||| | || || | || | || || | | || | || | | || ||||| Sbjct 137438 GAAGCACTTTGCCTCGGCTACCTTGACTTCATCGCAGAAGTTTTTCACCAGATTCTCATT 137379 Query 37574 AACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAA--AATGTCT-TTC 37630 || || |||||| || |||||||| || | ||| |||| ||| ||| || Sbjct 137378 GACAATACCATCAGAAGTAGCAAAGAAGGCCAACACACGAGAAATAAAGAATCTCTCATC 137319 Query 37631 ATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGT 37690 ||||||| | || | ||| ||| | | || ||||| | ||||||||| || | || Sbjct 137318 ATCATTTAGTTTTTCCTCCCAGTCAATCAAGTCCTTTGACAGATCAACTTCCTCGGCTGT 137259 Query 37691 CCAAAAA 37697 ||| ||| Sbjct 137258 CCAGAAA 137252 >seq11881 Length=132943 Score = 170 bits (188), Expect = 2e-37 Identities = 530/815 (65%), Gaps = 8/815 (1%) Strand=Plus/Plus Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 |||||| || || ||| | || || ||||| |||||||||| || || || | || Sbjct 44545 TTGATAGTCAGAGACACGTTTCTCAAAGAAATTGGTCTTTCCTTGAAGCGAAATCATGTC 44604 Query 36947 CATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCAGAAG 37006 ||| |||||||| || ||||| | ||| || || || | | | || || Sbjct 44605 CATGAAATCAAAGGGGTTAGAGGCATTGTAAATTTTATCGAAGCCGAGGGCGACCATGAG 44664 Query 37007 CCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTT 37066 || || ||||||||||| ||||||| ||||| || | ||| || ||||| || || Sbjct 44665 TCTGTCAGCAACAAATTCAATGTATTGGCACATGAGGTTGGCGTTCATGCCAATAAGATT 44724 Query 37067 TACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATAT 37125 || || | || || | ||||| | || || ||| ||||| ||| | || Sbjct 44725 AACAGGCAAAGCGTCAGTCAAGAATTC-TTGCTCAATTTCAACAGCCTCTGCGATGATGC 44783 Query 37126 TAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAAT 37185 | | | |||| | |||| | || | || ||||||| | ||| ||||| | Sbjct 44784 TCTTTACACGCTCTTGGGAGGGGGTTTTCTTCAGATGGGTAAACAAGAGACAGGCAAAGT 44843 Query 37186 CACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTA 37245 | ||| | || || || | | |||||||||||||||||||| || || ||||| | Sbjct 44844 CGGTATGAAGGCCCTCGTCACGAGAGATCAATTCATTAGAAAAGGTCAACCCAGGCATGA 44903 Query 37246 AACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAA 37305 || | || || | ||| || || | ||||| || || || ||||| |||||||| | Sbjct 44904 GGCCGCGCTTCTTGAGCCAGAAAATGGAGGCAAATGAGCCTGAGAAGAAGATACCTTCGA 44963 Query 37306 CTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAttttt 37365 | || ||||| || || | | | | | ||| ||| || |||| |||||||| Sbjct 44964 CGGCAGCAAAAGCAACTAATCTTTCAGCAAAA---GAATCATTGCCAGAGATCCATTTGA 45020 Query 37366 ttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGt 37425 | ||| || |||||| || | ||| || |||||||| || | ||||| | | Sbjct 45021 AGGCCCAGTCAGCCTTTCTCTTGATACAGGGGATGGTTTCAATGGCGTCAAAGAGCATCT 45080 Query 37426 ttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAA 37485 ||||| | ||||| | |||||||| ||||| | | ||| || | |||| |||| Sbjct 45081 CCTTTTCAGCGCTATCCTTGATATAAGTGTCAATCAAAAGACTGTATGTCTCAGCATGAA 45140 Query 37486 TATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGT 37545 | |||||||| || || || |||||||| ||||| | ||||||| | | || || | Sbjct 45141 TGTTTTCAATGGCGATTTGGAAACCATAGAAACATTTGGCTTCAGGAATCTTGACTTCAT 45200 Query 37546 TAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAA 37605 | |||| | | | | |||||| || || | |||||| | |||||||| || | Sbjct 45201 CACAAAAGTTTTGCACCAGGTTTTCGTTTACAACACCATCAGCACTAGCAAAGAACGCCA 45260 Query 37606 GAACATATTTTATAAAATGTCTTTCATCAT--TTGATAAT-TTTTTCCAATCATTAATAT 37662 ||| ||||| | |||||| | | || || | ||| |||||||| || Sbjct 45261 ACACACGAGAGATAAAGTATCTTTCGTTTTCATTCATCTTGGTTTCCCAATCATGTTGAT 45320 Query 37663 CTTTTGATAAATCAACTTCATCAACGGTCCAAAAA 37697 | || || || || | ||| || | ||||| ||| Sbjct 45321 CCTTAGACAAGTCGATTTCCTCTGCAGTCCAGAAA 45355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592201024277480