Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq11881 143 5e-29 >seq11881 Length=132943 Score = 143 bits (158), Expect = 5e-29 Identities = 472/733 (64%), Gaps = 20/733 (3%) Strand=Plus/Minus Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTG-TGCGAGAGATT 25655 |||||||| |||||||| |||||||| | || ||||| || ||| ||| | | || Sbjct 45264 GTGTTGGCGTTCTTTGCTAGTGCTGATGGTGTTGTAAACGAAAACCTGGTGCAAAACTTT 45205 Query 25656 CACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 | | |||| || | | || || |||| |||||||| |||||||| || ||||| | Sbjct 45204 TGTGATG-AAGTCAAGATTCCTGAAG-CCAAATGTTTCTATGGTTTCCAAATCGCCATTG 45147 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCG 25771 |||| | || ||||| || || ||| |||| || || || | || || Sbjct 45146 AAAACATTCATGCTGAGACATA---CAGTCTTTTGATTGACACTTATATCAAGGATAGCG 45090 Query 25772 CCGAGA--GAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 | || | ||||| ||| |||| ||||| || ||| ||| | |||||||| ||||| Sbjct 45089 CTGAAAAGGAGAT--GCTCTTTGACGCCATTGAAACCATCCCCTGTATCAAGAGAAAGGC 45032 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||| | || |||||| || | | | | |||| || | | || || Sbjct 45031 TGACTGGGCCTTCAAATGGATCTCTGGCAAT---GATTCTTTTGCTGAAAGATTAGTTGC 44975 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 |||||||| || || || ||||| ||| || || ||||| |||| ||||||||||| Sbjct 44974 TTTTGCTGCCGTCGAAGGTATCTTCTTCTCAGGCTCATTTGCCTCCATTTTCTGGCTCAA 44915 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||| ||| || |||||| || || | ||| | |||||||| Sbjct 44914 GAAGCGCGGCCTCATGCCTGGGTTGACCTTTTCTAATGAATTGATCTCTCGTGACGAGGG 44855 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069 || || | || |||||||| || | | || ||| || | | || || || Sbjct 44854 CCTTCATACCGACTTTGCCTGTCTCTTGTTTAC---CCATCTGAAGAAAACCCCCTCCCA 44798 Query 26070 AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 |||| || | || |||||| ||||||||| || || ||| | || || Sbjct 44797 AGAGCGTGTAAAGAGCATCATCGCAGAGGCTGTTGAAATTGAGCAAGAATTCTTGACTGA 44738 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | ||||||||| || |||||| ||||||||||||| | Sbjct 44737 CGCTTTGCCTGTTAATCTTATTGGCATGAACGCCAACCTCATGTGCCAATACATTGAATT 44678 Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCC 26249 ||| || ||| || || | || || ||| | | | |||| | | ||||||| Sbjct 44677 TGTTGCTGACAGACTCATGGTCGCCCTCGGCTTCGATAAAATTTACAATGCCTCTAACCC 44618 Query 26250 GTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309 || || || ||||| | || ||| | |||| |||||||| |||||||| || | || Sbjct 44617 CTTTGATTTCATGGACATGATTTCGCTTCAAGGAAAGACCAATTTCTTTGAGAAACGTGT 44558 Query 26310 CGGCGACTATCAA 26322 | ||||||||| Sbjct 44557 CTCTGACTATCAA 44545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928663245673280