Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2806 241 2e-58 seq7012 165 1e-35 >seq2806 Length=81310 Score = 241 bits (266), Expect = 2e-58 Identities = 517/755 (68%), Gaps = 31/755 (4%) Strand=Plus/Minus Query 47583 CCAACCCAATTTTTTCTTTGCCTTAGAGGCATCACCTAATAAGGTCTCTACTTCAGCAGG 47642 ||| ||||||| | || ||||| | || |||||| | ||| || ||||| ||||| Sbjct 11094 CCAGCCCAATTCAGTGTTGGCCTTGGTGGGATCACCAAGCAAGAGTTCAACTTCGGCAGG 11035 Query 47643 ACGGAAATATTTAGAGTCAATTCTGATAACCG--TTTTACCA---TCAGAATCAATACCA 47697 |||||||||||||| ||||| | || | || | || || |||| ||| | ||| Sbjct 11034 ACGGAAATATTTAGGATCAATAC-GA-ACGCGAATCTTGCCTGATTCAGCATCTTTGCCA 10977 Query 47698 ACTTCATCAAGACCAGAACCTTCCCATCTAATATTCATATCAAAATAAGGTGCA-GATTC 47756 || || | || ||| |||||||| ||||| | | | | | || | | || Sbjct 10976 ACCTCGTTAACACCCTCGCCTTCCCAAACAATAT-CTTTGCCAGTGACCTTGAAAGCTTT 10918 Query 47757 CTCAACAAA-CTGACGGACAGAATATTGATTTC--CTGTGGCAATAACAAAATCATCAGG 47813 ||||| || ||| || |||| | | |||| | ||||| | || ||||| | ||| Sbjct 10917 TTCAACGAAGCTG-CGAACAG--TGTGAGTTTCACCAGTGGCCAAGACGAAATCTTGAGG 10861 Query 47814 TTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTC 47873 |||||||||||||| | ||||||| |||| | |||||| | || |||||||| || Sbjct 10860 AGTATCTTGTTGAAGCATGAGCCACATACCCTCAATATAATCACGAGCGTGTCCCCAATC 10801 Query 47874 ACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTT 47933 ||| ||||||| || || ||||| | ||| ||||| |||| | ||| | Sbjct 10800 ACGCTTAGCATCAATGTTACCAAGATAAAGACATTCTTGACGACCTAAATGGATATCAGC 10741 Query 47934 TAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATT 47993 | || | || || |||||||| |||||||| ||||| | ||| ||| || || Sbjct 10740 AACAGCACGAGTGATTTTACGAGTGACAAAAGTGCGGCCACGACGAGGACTTTCGTGGTT 10681 Query 47994 AAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTT--CTTTACTATC 48051 || ||||||||| ||||||||||||| |||||||| ||||| || | || ||| Sbjct 10680 GAACAGAATACCATTACAGGCATACATGTTATATGATTCGCGATAATTGACAGTA--ATC 10623 Query 48052 CAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCT 48111 ||||| || || ||||| || ||||| || |||||||| ||||| ||||| || || ||| Sbjct 10622 CAGTAACCGTAAAGTTTAGCCACACCGTAGGGAGAACGAGGATAAAAAGGCGTAGTTTCT 10563 Query 48112 GTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGA 48171 | || || ||||| || || |||||||||||| ||| || || ||||||| |||| Sbjct 10562 TTTTGAGGGGTCTCAACGACTTTGCCATAAAGTTCAGAGGTAGAAGCCTGATAGAAACGA 10503 Query 48172 ACCCTATCTTCCATCTCAA---GCAA--ACGGACTGCCTCAAGCACTCTCAGGGTGCCTA 48226 | | ||| ||||| |||| ||||| || || | | | || || || | Sbjct 10502 GCACGATC-----ACTCAAACCGCAAGTACGGATAGCATCTAAAAGACGGAGAGTACCGA 10448 Query 48227 TGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTG 48286 ||||| | |||||| || || | ||| ||||| || ||||| |||||| || | Sbjct 10447 GAGCATCGACATCACCAGTGTATTCAGACATATCAAATGAGACCTTGACATGAGATTGAG 10388 Query 48287 C-CCCAAGATTATAAATCTCATCTGGTTGAACCTG 48320 | ||||| || |||| || ||||||||||| Sbjct 10387 CAGCCAAG-TTGTAAACTTCGGTAGGTTGAACCTG 10354 >seq7012 Length=541359 Score = 165 bits (182), Expect = 1e-35 Identities = 465/709 (66%), Gaps = 9/709 (1%) Strand=Plus/Plus Query 47576 TAGGTTCCCAACCCAATTTTTTCTTTGCCTTAGAGGCATCACCTAATAAGGTCTCTACTT 47635 |||||||||| ||||| |||| ||||| | | ||| || || || || |||| Sbjct 101587 TAGGTTCCCAGCCCAAGGCAGTCTTGGCCTTTGTAGGATCTCCCAACAACAGTTCGACTT 101646 Query 47636 CAGCAGGACGGAAATATTTAGAGTCAATTCTGATAACCGTTTTACCA---TCAGAATCAA 47692 |||| ||||| || || || | ||||| | | || | ||| ||| |||| ||| Sbjct 101647 CAGCGGGACGAAAGTACTTGGGATCAATGCGCACAAGCACTTTGCCAGTTTCAGCATCCT 101706 Query 47693 TACCAACTTCATCAAGACCAGAACCTTCCCATCTAATATTCATATCAAAATAAGGTGCAG 47752 | || ||||||| || || |||||||| ||| | || | | || Sbjct 101707 TGCCGACTTCATTAACTCCTTCCCCTTCCCAGACAATGGTATGCCCAGTTTTCTGGAAAG 101766 Query 47753 ATTCCTCAAC-AAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCA 47811 | ||||| ||||| |||||||| |||| || || || || | || |||||||| Sbjct 101767 CCTTTTCAACGAAACT-ACGGACAGTATATGTTTTACCAGTAGCCAATACGAAATCATCG 101825 Query 47812 GGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAG 47871 ||||| ||||| || | ||| | ||||||| ||| | |||||| | || || ||||| Sbjct 101826 GGTTCGTCTTGCTGTAACATGAGCCACATACCCTGAATATAATCGCGAGCGTGGCCCCAA 101885 Query 47872 TCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCT 47931 || || ||||||| ||| || | ||||| || ||||| ||| | || | Sbjct 101886 TCGCGTTTAGCATCAATATTGCCCAAGTATAAGCACTCTTGGCGACCCAAATGAATATCA 101945 Query 47932 TTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGA 47991 | || | |||||||| | |||||||| || |||||| | || || || Sbjct 101946 GCAACGGCACGGGTAATCTTTCTCGTTACAAAGGTACGACCACGACGAGGGCTCTCGTGG 102005 Query 47992 TTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATC 48051 || || | || || | |||| | |||| ||| ||||| || || || || ||| Sbjct 102006 TTGAACAAGATGCCGTTGCAGGTAAACATATGGTACGATTCGCGGTAATTGCGCACAATC 102065 Query 48052 CAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCT 48111 ||||| ||||| || || || ||||||||||||||||| |||||||| ||||| || || Sbjct 102066 CAGTAACCATAAAGCTTGGCGACACCATAAGGAGAACGAGGATAGAAGGGTGTTGTTTCC 102125 Query 48112 GTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGA 48171 | || |||||||| || || || || | ||| || || |||||||||| || Sbjct 102126 TTTTGAGGAGTCTCCATTACTTTGCCGTACAATTCTGAAGTCGAAGCTTGATAGAATCGG 102185 Query 48172 ACCCTATC--TTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGG 48229 || | ||| | | |||| ||||| ||| || | | | || || || | | Sbjct 102186 ACACGATCAGTGAGGCCACAAG--TACGGATTGCATCCAAAAGACGAAGTGTACCAAGAG 102243 Query 48230 CATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATG 48278 |||| | |||||| || || | ||| ||||| ||||| || || || Sbjct 102244 CATCGACATCACCAGTGTATTCTGACATGTCAAAGGAAACTTTGACGTG 102292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665364320800840