Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq14752 152 8e-32 seq11881 138 2e-27 seq513 102 1e-16 >seq14752 Length=160396 Score = 152 bits (168), Expect = 8e-32 Identities = 388/578 (67%), Gaps = 19/578 (3%) Strand=Plus/Minus Query 18162 CAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGG 18221 ||||||||| |||| |||||||| | | || ||||| ||| || || || || | Sbjct 137775 CAAAATCAGCATGTAGGCCTTCATCACGAGTAATGAATTCATTAGAAAGAGTCAAACCAG 137716 Query 18222 GCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTA-CTAGAAAAGAATATA 18280 |||||| ||| | || || |||||||| || || || |||| | | ||||||||| ||| Sbjct 137715 GCATTAAACCACGCTTCTTGAGCCAAAAGATAGAGGC-AAACGATCCAGAAAAGAAGATA 137657 Query 18281 CCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAAC--TGTATTTATTGCTCAGT 18337 ||||| || ||| || || || | | | || ||||| || || ||| | || Sbjct 137656 CCCTCCACAGCA-GCAAAAGCAACAATACGGACACCAAAAGGTTGGTTTGATTCATTAGA 137598 Query 18338 -ATCCATTTTTGTGCCCA-TTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 |||||||| ||||| || |||| ||| || || | || || |||| Sbjct 137597 GATCCATTTGAAAGCCCAGTTAGCCTTATCCTTAATGACA-GGAATGGTTTCGATGGCAT 137539 Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455 |||| || ||||| || | |||||||| || ||||| ||||| || | || |||| Sbjct 137538 TAAATAAGAATTCTTTCTCAATAGAATCTTTAATGTAAGTATCGATCAATAGCGAGTACA 137479 Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG-GA 18514 ||||||| || ||| | || || |||||||||| || || | | ||||||| | Sbjct 137478 TTTCAGAGTGAATGTTCTCAATCATGATCTGAAAACCGTAGAAGCACTTTGCCTCGGCTA 137419 Query 18515 TATTGAAT--CTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 |||| | |||| | || ||| |||| ||||||||| || ||||| |||| || Sbjct 137418 CCTTGACTTCATCGC---AGAAGTTTTTCACCAGATTCTCATTGACAATACCATCAGAAG 137362 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATT---GT 18629 || || || ||||| ||| ||| || | | |||| ||| || || || | Sbjct 137361 TAGCAAAGAAGGCCAACACACGAGAAATAAAGAATCTCTCATCATCATTTAGTTTTTCCT 137302 Query 18630 TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGG 18689 ||| ||| | || ||||| ||||||||||| || | |||||| ||||| | ||| | Sbjct 137301 CCCAGTCAATCAAGTCCTTTGACAGATCAACTTCCTCGGCTGTCCAGAAAGAGGCTTCAG 137242 Query 18690 CCTGTTTGTACATTTTATAAATATCTTCATGTTGTATA 18727 | | ||| || | || |||| | | | |||||||| Sbjct 137241 CTTTTTTATAGAATTCCCAAATCTATAC-CGTTGTATA 137205 Score = 138 bits (152), Expect = 2e-27 Identities = 537/833 (64%), Gaps = 33/833 (4%) Strand=Plus/Minus Query 17885 TTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATTA 17944 || || ||||| ||||||||||||| | || || |||| |||||||||||| |||||| Sbjct 135979 TTTTCAAAGAAGTTTGTCTTTCCTTGAAGGGAAATCAAATCCATAAAATCAAAGGGATTA 135920 Query 17945 GTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATA-ATCT----ATCTGCTACAA 17999 | ||||| | |||| || | || ||| ||| || |||| Sbjct 135919 GAAACATTATAGTG-----CTTGGGGAAACCAAGAGAAACCATCAGACGATCAGCAACAA 135865 Query 18000 ATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCAT 18059 ||||||| || || |||| | || ||||||||| | | ||| | || | || | Sbjct 135864 ATTCGACGTACTGACACATTAGTTCATCATTCATACCGATCAATCTAACGGGCAATGCTT 135805 Query 18060 CAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATT 18119 | | | ||| || ||||||||| || | ||| | | || | | || || || Sbjct 135804 CTTTGAAAAAACTTTGCTCTATCTCGACGGCCTCCGTCAAAATCTGAAGAAC---AGTTT 135748 Query 18120 T-TGGCAA--TTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGTA 18176 ||| || || |||||| ||||| | | ||| | ||| ||||||||| || | Sbjct 135747 CATGGGAAGGTTGATTAATCATGTGGTGGAA---TAAAAGACAGCCAAAATCAGCATGAA 135691 Query 18177 AACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttt 18236 ||||||||| | | || || || || | || || || ||||||| ||| | | Sbjct 135690 GACCTTCATCACGAGTAATGAACTCATTGGAGAGAGTCAAACCAGGCATTAAACCACGCT 135631 Query 18237 tttttAGCCAAAATATCGATGCGAAACTA-CTAGAAAAGAATATACCCTCAACGCACGCG 18295 |||| |||||||| || || || |||| | | |||||||| | ||| || | || Sbjct 135630 TTTTGAGCCAAAAGATAGAGGC-AAACGAGCCTGAAAAGAAGACACCTTCGATAATAGCA 135572 Query 18296 AACGCTATTAATCTTTCAGCAAAACTGTATTT--ATTGCTCAGT-ATCCATTTTTGTGCC 18352 || || | | | | || ||| | || ||| | | |||||||| ||| Sbjct 135571 AAGGCACAGATACGTACGGCGAAAGGTTGGTTGGATTCGTTGGCGATCCATTTGAAAGCC 135512 Query 18353 CATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTT 18412 || || | | || || ||| ||||||| |||||||||||| || ||| Sbjct 135511 CAATCAGCCTTGGTCTTGATTTGAGGAATAGTCTCTATGGCATTAAACAAAAATTCCTTT 135452 Query 18413 TCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTT 18472 || || ||| || ||||| || ||||| || | || ||||||||||| || ||| | Sbjct 135451 TCAACGGGATCCTTGATATACGTATCGATCAATAGGGAGTACATTTCAGAGTGAATGTTC 135392 Query 18473 TCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCG-GGATATTGAAT--CTCGCTA 18529 || || |||||||||| ||||| || |||||||| || || | | |||| Sbjct 135391 TCAATCATGATCTGAAAACCGTAAAAACATTTAGCCTCGCCTATCTTAACTTCATCGC-- 135334 Query 18530 TAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAA 18589 |||| || | || ||||| ||||| || || || || | || ||| ||||| || || Sbjct 135333 -AAAAGTTTGCAACTAAATTTTCATTGACGATGCCATCCGAAGTTGCAAAAAAAGCTAAT 135275 Query 18590 ACATATTTAATGAAATGTTTTTCATTATCCTTGAGATT---GTTCCATTCATCTATATCT 18646 ||| ||||| || ||||| | || || || | ||| ||| ||| ||| Sbjct 135274 ACACGGCCGATGAAGTGGCGTTCATCCTTGTTCAGCTTTTCCTCCCAATCAAGTATGTCT 135215 Query 18647 TTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTA 18699 || |||| |||||| |||||| ||||| || || | |||||| | ||||| Sbjct 135214 TTGGATAAATCAACCTCTTCCACAGTCCAGAACGAAGCTTCGGCTTTCTTGTA 135162 >seq11881 Length=132943 Score = 138 bits (152), Expect = 2e-27 Identities = 533/827 (64%), Gaps = 25/827 (3%) Strand=Plus/Plus Query 17884 TTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATT 17943 |||||| |||||||| |||||||||| | || || | | ||| |||||||| || || Sbjct 44563 TTTCTCAAAGAAATTGGTCTTTCCTTGAAGCGAAATCATGTCCATGAAATCAAAGGGGTT 44622 Query 17944 AGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCTATCTGCTACAAATTC 18003 || || || ||| ||| || | || | | ||| || || |||||||| Sbjct 44623 AGAGGCATTGTAAATTTTATCGAAGCCGAGGGCGACCATGAGTCTGTCAGCAACAAATTC 44682 Query 18004 GACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAAT 18063 | ||||| |||| | | | ||||| || | || | | ||| | ||| ||| | Sbjct 44683 AATGTATTGGCACATGAGGTTGGCGTTCATGCCAATAAGATTAACAGGCAAAGCGTCAGT 44742 Query 18064 AATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTTTGG 18123 | ||||||| ||| || ||||||| |||| || ||| | |||| | | | |||| Sbjct 44743 CAAGAATTCTTGCTCAATTTCAACAGCCTCTGCGATGATGCTCTTTACAC--GCTCTTGG 44800 Query 18124 CAA-----TTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGTAAA 18178 | ||| || | ||| | ||| | || | ||| ||||| || || || | Sbjct 44801 GAGGGGGTTTTCTTCAG-ATGGG----TAA-ACAAGAGACAGGCAAAGTCGGTATGAAGG 44854 Query 18179 CCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttt 18238 || || || | || || ||||| ||| ||| || ||||| ||||| | || | || Sbjct 44855 CCCTCGTCACGAGAGATCAATTCATTAGAAAAGGTCAACCCAGGCATGAGGCCGCGCTTC 44914 Query 18239 tttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAAC 18298 || ||||| || || || || || | || ||||| ||||| || ||| || || Sbjct 44915 TTGAGCCAGAAAATGGAGGCAAATGAGCCTGAGAAGAAGATACCTTCGACGGCAGCAAAA 44974 Query 18299 GCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG-TATCCATTTTTGTGCCCATTC 18357 || | |||||||||||||||| | | ||||| ||| |||||||| ||||| || Sbjct 44975 GCAACTAATCTTTCAGCAAAA---GAATCATTGC-CAGAGATCCATTTGAAGGCCCAGTC 45030 Query 18358 TCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACA-AATCATCTTTTTCTT 18416 | | ||||| || || | || || || | ||| | ||| || ||||| Sbjct 45031 AGCCTTTCTCTTGATACAGGGGATGGTTTCAATGGCGTCAAAGAGCATC-TCCTTTTCAG 45089 Query 18417 TGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCA 18476 | ||| || ||||||||||| || || | | || | |||| ||| ||| |||| | Sbjct 45090 CGCTATCCTTGATATAAGTGTCAATCAAAAGACTGTATGTCTCAGCATGAATGTTTTCAA 45149 Query 18477 TAGCTATCTGAAAACTATAAAACGATCTAGCCTC-GGGATATTGAATCTCGCTATAAAAT 18535 | || || || |||| ||| || || | || || || || |||| | || | |||| Sbjct 45150 TGGCGATTTGGAAACCATAGAAACATTTGGCTTCAGGAATCTTGACT-TCATCACAAAAG 45208 Query 18536 CTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATAT 18595 ||| |||| || || || || | ||| |||||| || || || ||||| ||| Sbjct 45209 TTTTGCACCAGGTTTTCGTTTACAACACCATCAGCACTAGCAAAGAACGCCAACACACGA 45268 Query 18596 TTAATGAAATGTTTTTCATTATCCTTGAGATTG---TTCCATTCATCTATATCTTTTGAT 18652 || || | | |||| || || || | ||| | ||| |||| | ||| || || Sbjct 45269 GAGATAAAGTATCTTTCGTTTTCATTCATCTTGGTTTCCCAATCATGTTGATCCTTAGAC 45328 Query 18653 AGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTA 18699 | || | ||| || | ||||| ||||| | ||| || | ||||| Sbjct 45329 AAGTCGATTTCCTCTGCAGTCCAGAAAGAGGCTTCAGCTTTCTTGTA 45375 >seq513 Length=239887 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | ||||| ||||||||||| |||||||| ||| | | Sbjct 208302 ATGCAGATTTTCGTCAAAACTCTTACTGGCAAAACTATTACGTTAGAAGTTGAATCTACC 208361 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || | || || ||||| || |||||||| || ||||| ||| Sbjct 208362 GATATGATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAA 208421 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||||| ||||| | |||||| | ||| | ||||| || ||| Sbjct 208422 CAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGATGGTCGTACTCTTTCAGACTACAAT 208481 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || || | || |||||||| || Sbjct 208482 ATCCAGAAGGAATCTACTCTTCATTTGGT 208510 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | ||||| |||||||||||||||||||| ||| | | Sbjct 203108 ATGCAGATTTTCGTCAAGACTCTTACTGGTAAAACTATTACATTAGAAGTTGAATCTACC 203167 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || | ||||| |||||||| ||||| || || ||||| ||| Sbjct 203168 GATATGATTGATAATGTCAAGCAAAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAA 203227 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | | |||| ||||| ||||| | |||||| Sbjct 203228 CAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGAT 203263 Score = 93.3 bits (102), Expect = 6e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || |||| || | ||||| || || |||||||||||||| ||| Sbjct 208071 AATATGCAAATCTTCGTTAAGACTCTTACTGGCAAGACCATTACATTAGAAGTTGAATCC 208130 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 |||||| ||| || || || | || || ||||| || ||||| || || ||||| Sbjct 208131 ACTGATACGATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCCCCAGAC 208190 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | | |||| ||||| ||||| | |||||| | ||| | | ||| ||| Sbjct 208191 CAACAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGATGGTCGTACTCTTTTAGACTAT 208250 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || || ||| || | || ||||| || || Sbjct 208251 AACAT-TCAAAAGGAATCTACTCTTCACTTGGT 208282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731728946469200