Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq15377 105 1e-17 seq2291 91.5 3e-13 seq513 84.2 4e-11 >seq15377 Length=116332 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | |||| ||| | || | || || || || || || Sbjct 81299 ATACCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCT 81240 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || | || | || || ||||||||||| |||||||| || | || || || || Sbjct 81239 GACAACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGA 81180 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || | || |||||| || || || |||||| Sbjct 81179 GGAATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCT 81120 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || | ||| |||||||| ||||| | ||| || | || || ||||| || Sbjct 81119 ACCTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATATT 81067 >seq2291 Length=180 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || || ||||||||||| |||||||| || | || || || || || || |||||||| Sbjct 156 TCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTG 97 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 ||||| || || | || |||||| || || || |||||||| || | ||| ||| Sbjct 96 TCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTGATG 37 Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| | ||| || | || || ||||| Sbjct 36 GTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 2 >seq513 Length=239887 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 192381 ATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTT 192440 ||| || ||||| || || || || || | | ||||| || || || || ||||| || Sbjct 203263 ATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTT 203204 Query 192441 ATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAAT 192500 |||||| ||||| | || |||||| || ||| | ||||| ||||||| ||||| Sbjct 203203 ATCTTGAATTTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTAAT 203144 Query 192501 GGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||||| | || || | || |||||||| Sbjct 203143 AGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 203108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984282760354950