Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq15377 127 4e-24 seq2291 111 3e-19 seq14752 105 1e-17 seq513 100 5e-16 >seq15377 Length=116332 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | |||| ||| | || | || || ||| || || ||| Sbjct 81299 ATACCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCT 81240 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || || || |||| || ||||||||||| ||||| || || | || ||||| || Sbjct 81239 GACAACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGA 81180 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || | || |||||| || | || || |||||| Sbjct 81179 GGAATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCT 81120 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || | ||| |||||||| ||||| | ||| || | ||| || ||||| || Sbjct 81119 ACCTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATATT 81067 >seq2291 Length=180 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 171891 TTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGT 171950 || || ||||| || || || |||| || ||||||||||| ||||| || || | || Sbjct 180 TTGTAGTCTGACAACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGC 121 Query 171951 TGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCT 172010 ||||| || || || |||||||| ||||| || || | || |||||| || | || Sbjct 120 TGGTCTGGAGGAATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCG 61 Query 172011 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || | ||| |||||||| ||||| | ||| || | ||| || ||||| Sbjct 60 GATGATTCTACCTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 2 >seq14752 Length=160396 Score = 105 bits (116), Expect = 1e-17 Identities = 287/436 (66%), Gaps = 5/436 (1%) Strand=Plus/Minus Query 38834 TTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATT 38893 ||| || |||||||| ||||| |||||||| |||||||||| || || || | | Sbjct 138068 TTGATAATCAGAAACACGCTTTTCAAAAAAGTTAGTTTTTCCTTGCAAAGAAATCAGCTC 138009 Query 38894 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATAT-AATA 38952 |||||||||||| || ||| | ||| |||| |||| | ||| | ||| || | Sbjct 138008 CATAAAATCAAAGGGGTTTGAGACATTGTAAT-TTTTAGGGAAACCAAGAGATACCAAGA 137950 Query 38953 ATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATT 39012 | ||||| |||||| ||| ||||| |||| || | |||||||| | ||| Sbjct 137949 GACGGTCGGCAACAAATCTAACGTATTGGCACATCAACTTGTCGTTCATACCAATTAAAC 137890 Query 39013 TAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatca 39072 | || | | ||||| || || | ||| || || || || | | || || Sbjct 137889 GCACAGGAAGAGAATCATTAAAGTATGACTCTTCGATCTCAACCGCCTCAGTGATAATTT 137830 Query 39073 taattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGCAA 39132 || | | | | | ||| | || | | ||||| | | | | ||| ||| Sbjct 137829 GAAGAACAGTTTCATGTGAAGGCTGATCAATCAAATGATG---AAACAAGAGGCATCCAA 137773 Query 39133 AATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCA 39192 |||| | ||||| ||||| || | || || ||||||||| || ||| || || |||| Sbjct 137772 AATCAGCATGTAGGCCTTCATCACGAGTAATGAATTCATTAGAAAGAGTCAAACCAGGCA 137713 Query 39193 TTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCT 39252 |||| || | ||| || |||||||| || || ||||| | ||||||||| ||||||| Sbjct 137712 TTAAACCACGCTTCTTGAGCCAAAAGATAGAGGCAAACGATCCAGAAAAGAAGATACCCT 137653 Query 39253 CCACACACGCAAATGC 39268 ||||| ||||| || Sbjct 137652 CCACAGCAGCAAAAGC 137637 >seq513 Length=239887 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || ||||| || || || ||||| | | |||||||| || || || ||||| ||| Sbjct 203262 TCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTA 203203 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| ||||| | || |||||| || |||| | ||||| ||||||| ||||| Sbjct 203202 TCTTGAATTTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTAATA 203143 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||||||| | || || | ||| |||||||| Sbjct 203142 GTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 203108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904959079854600