Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq15059 114 4e-20 seq7507 109 2e-18 seq8767 104 7e-17 seq11881 98.7 3e-15 seq12408 91.5 4e-13 seq13990 87.8 5e-12 >seq15059 Length=189487 Score = 114 bits (126), Expect = 4e-20 Identities = 195/278 (70%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651 ||||||||| ||||| || ||| || || || ||||| ||||| || ||||| |||| Sbjct 15117 ACGACGCTGGATATAGCCTGTTTCAGCAGTCTTAACAGCAGTATCGATCAGACCTTCACG 15176 Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCT 302710 |||||||||||| ||||| || | |||| || ||| | || | | | ||| ||| Sbjct 15177 ACCACCCATAGCGTGGAAAAAGAACTCTGTAGG-CGTCAAACCTCTCAGGTACGAGTTCT 15235 Query 302711 CAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT 302770 | || |||||||| ||| || || |||| ||| | || || || || || | | Sbjct 15236 CGACAAAACCACGGCTCTCAGGACTATGGTCGTCCTTTGAGAAATGAGGAAGCGTACGGA 15295 Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCA 302830 || ||||||| || ||||| || || || ||||||||||| || | || | | || Sbjct 15296 ACTTGAAGCCGTAAGGAATACGTTTACCTTCGACGTTCTGCTGGCCGACACAGGCAGACA 15355 Query 302831 TCTGCGAAATATT--TAAATCACTGCCCTTGGAGCCAG 302866 | |||||||| || | || | |||||| ||||||| Sbjct 15356 TTTGCGAAATGTTGATGAACGA--GCCCTTTGAGCCAG 15391 Score = 100 bits (110), Expect = 8e-16 Identities = 114/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 301814 GAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAA 301873 || || ||||||| || || |||||| | |||||||| | ||| ||||||||| Sbjct 14273 GATTTCCTTCAAT-CGAGGCACACCAAGCGTTACGTTCTTACTAGAC---ACACCAGCAT 14328 Query 301874 AGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCA 301933 | |||||||||||||| || | ||||||| ||| ||||| ||| ||| || |||||| Sbjct 14329 AATGGAAAGTATTCAGTGTCATCTGAGTAGCTGGTTCACCGATAGATTGGGCAGCAATCG 14388 Query 301934 TACCAACCATTTCTCCTGGTGCTACAATAGA 301964 | || |||||||| || || || || ||||| Sbjct 14389 TGCCTACCATTTCACCGGGAGCGACGATAGA 14419 >seq7507 Length=243275 Score = 109 bits (120), Expect = 2e-18 Identities = 489/768 (64%), Gaps = 19/768 (2%) Strand=Plus/Plus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTG---TATTCTACAATC 155642 |||| || ||||||||||| || || | ||| ||| |||| ||||| || || Sbjct 203724 CAATGGAGGCCAGATTACAGACGGC----TACTTCGTCAGGGCTGGAATATTCAACGATT 203779 Query 155643 TCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTA 155702 ||| || |||||| || |||||| || || | ||||| ||||| || || || Sbjct 203780 TCAGTACAAAGGTTACTACACTTGATAGTACCCAGATTCTGTTGGTTGCTCTTTCTATTG 203839 Query 155703 CAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTT 155762 ||||||||||| || || ||| | || | || || || | || || |||| || Sbjct 203840 CAAGCATCCTTATAGAGCATGAAAGGATTACCGGTTTCAGTTTGAGCCTCCAAGATGGCA 203899 Query 155763 AGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTA--TCTGCCTTCCGACTCATATTTCA 155820 ||| || | | || || || | || | || ||||||||| |||||| | Sbjct 203900 TACCAAAGCTTTTGTGCCTTGAT--GGTTTCTCTAGCTCTGCCTTCACGCTCATACTGTT 203957 Query 155821 TATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGC 155880 | ||| || | | || || || | |||| || ||||| || | ||| | Sbjct 203958 CAAACAAGGTCTTGAATTCATCGCCCCACACTTCACATAGGCCAGGAGCCTCGTTGGGAC 204017 Query 155881 AAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAA 155940 | || || ||||| ||| | | || ||||||||||| | |||| | |||||| Sbjct 204018 AGAAGAGAGACCACTCACCGTTATCTCTGACTCGCTCCATAAAGAGATCAGGCACCCAAA 204077 Query 155941 TAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTA 156000 |||||| || | || | || | || || | || || || || || || | Sbjct 204078 GAGCATAAAACAAATCGCGGGCTCTAATTTCGTCCTTACCAAAGTTTTTGCGGAGATCCA 204137 Query 156001 AGAATTCCTCAATAT--CAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCT 156058 ||| | | ||||| ||| ||| || ||||||||||| || ||| ||| | Sbjct 204138 GGAA--CATGAATATATCAGCATGCCAGGGTTCCAGATACATGGCGAAAGCGCCAGGACG 204195 Query 156059 CTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAAT 156115 ||| ||||| ||||| ||||| || || || || || || |||| ||||| || | Sbjct 204196 CTTATTACCACCTTGATCGACATAGCGGGCCGTGTTGTTAAACACACGCAGCATGGGCAA 204255 Query 156116 AATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATG 156175 | ||||| || ||| ||||| || ||| | ||||||| | || ||||| || Sbjct 204256 GAGGCCATTAGAGTAGCCGTTGGTACCAGCAATGTAAGAACCAGTAGCACGGACATTGTG 204315 Query 156176 AATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATT 156235 ||||| | || || ||||| | | || ||||||||||| || ||| | || | Sbjct 204316 AATATTCAAGCCGATGCCACCAGCCGTCTTTGAAATTTGAGCACAGATCTTGAGGGTTTC 204375 Query 156236 GAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGG 156295 | | |||||||| || || || |||| ||| | | | | || || | ||| || Sbjct 204376 GTAGATACCTTCGATCGAGTCCTCTTTCATGGTCAACAAGAAACAAGAGGACAGTTGTGG 204435 Query 156296 TCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 || || || ||||| ||||| | || || | ||||| | ||||| Sbjct 204436 GCGAGGAGTGCCAGCATTGAACAAGGTGGGACTGGCATGTGTGAAATA 204483 >seq8767 Length=28599 Score = 104 bits (114), Expect = 7e-17 Identities = 404/623 (65%), Gaps = 23/623 (4%) Strand=Plus/Minus Query 155910 ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC 155969 || |||| ||| || | |||| ||| | ||||||||| | ||||||||| | Sbjct 16295 ACCCGCTTCATGAAAAGATCAGGGATCCACAGAGCATAGAACATGTCCCTTGCTCTAATT 16236 Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATA--TCAGGATGGTGTG 156027 || ||| ||| ||| || || || || | ||| | | |||| || | ||| | Sbjct 16235 TCATCACGGCCAAAATTTTTGCGAAGATCCAGGAA--CATAAATACATCGGCATGCCAAG 16178 Query 156028 GCTCCAGATACATAGCAAAACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAG 156084 |||| || || |||||||| ||| | ||| |||||| ||||| || || |||| Sbjct 16177 GCTCGAGGTAAATAGCAAAGGCGCCAGGACGCTTATTGCCACCTTGATCCACGTAGCGAG 16118 Query 156085 CAGTCTTATTGAAGACACCTAGCATAGG-AATAATACCATTGGAAGTGCCATTGGTTCCG 156143 |||| | || ||||| ||||| || ||||| ||||| | ||||| | ||| Sbjct 16117 CAGTACTGTTAAAGACCTTGAGCATGGGTAATAA-ACCATGAGCTTCACCATTAGACCCG 16059 Query 156144 CGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT 156203 ||| | ||| ||| | || | ||||| | | || ||||||||||| | | Sbjct 16058 GCAATGTATGAATCAGTAGCACGGATGTTATGGACGTTTAAACCAATACCACCAGCGCTC 15999 Query 156204 TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCC 156263 || || || | | || ||| | ||| | || |||||||||| ||||| |||| Sbjct 15998 TTTGAGATCTTGGAACAACGCTTGAGAGTCTCAAAGATACCTTCAACCGAATC---TTCC 15942 Query 156264 ATTGATAGTAGATAG----CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAG 156319 ||| ||| |||| || || || ||||| || || || ||||| || || || Sbjct 15941 -TTGGGAGTCAATAGAAAACAAGACGATAGCTGAGGACGAGGAGTACCAGCATTAAAAAG 15883 Query 156320 TGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATG--TCTCCTTAATC 156377 ||||| | ||||| ||||||||||| | |||||| || ||| | || || | Sbjct 15882 AGTAGGACTAGCATGGATAAAATACTTTTGAGACATGAGATGGTAAGATTCGACTGCGGC 15823 Query 156378 TTCTCAAGATTAGACCCG-TGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACG 156436 |||| | | | || | ||||||| || | || | ||| || ||| ||||| | Sbjct 15822 --ATCAATA-TCGTCCGGATGAATACCAATGGCAACACGCATAATCAAATGTTGAGGCCT 15766 Query 156437 CTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAA 156496 ||| ||| | || | || || ||||| || | |||||| |||||| |||| ||||| Sbjct 15765 CTCAGCAACCTTGCCGTTGATACGGAGAAGATAAGAGCGTTCAAGAGTTCTAAAGCCGAA 15706 Query 156497 ATAATCAAACAGAAAATCACGGT 156519 | | || |||||||||| Sbjct 15705 GAAGTTGAAGTTGAAATCACGGT 15683 >seq11881 Length=132943 Score = 98.7 bits (108), Expect = 3e-15 Identities = 228/341 (67%), Gaps = 7/341 (2%) Strand=Plus/Minus Query 133319 TTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATT 133378 || ||||| | || || || || ||||| || ||| || ||||| | | | ||| Sbjct 45171 TTCTATGGTTTCCAAATCGCCATTGAAAACATTCATGCTGAGACATACAGTCTTTTGATT 45112 Query 133379 GATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT--AGCGAAT 133436 || ||||| ||||| |||| || | ||| | | || || |||||||| | | | Sbjct 45111 GACACTTATATCAAGGATAGCGCTGAAAAGGAGATGCTCTTTGACGCCATTGAAACCA-- 45054 Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 | || ||||| || | || |||||||||| | ||||||||| | ||| | | Sbjct 45053 TCCCCTGTATCAAGAGAAAGGCTGACTGGGCCTTCAAATGGATCTCTGGCAATGATTC-- 44996 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 ||||||| | | ||||||||||||| || || || || || ||| || | | Sbjct 44995 -TTTTGCTGAAAGATTAGTTGCTTTTGCTGCCGTCGAAGGTATCTTCTTCTCAGGCTCAT 44937 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 | ||| ||||| ||||| || ||||| || | | ||||| || |||||||| | Sbjct 44936 TTGCCTCCATTTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGGTTGACCTTTTCTAATG 44877 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 || | || || | ||||||| ||||| ||||| |||||| Sbjct 44876 AATTGATCTCTCGTGACGAGGGCCTTCATACCGACTTTGCC 44836 >seq12408 Length=363255 Score = 91.5 bits (100), Expect = 4e-13 Identities = 205/306 (67%), Gaps = 4/306 (1%) Strand=Plus/Plus Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 ||| |||| || ||||||||||||||||| || | || || | ||||| | || | Sbjct 162492 TTTTCCAATGGCGTCAATTTCGTCAATGAAGATGATGCAGGGCGCATTTTTCTTGGCCGT 162551 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||| | |||| || | ||||| |||| ||||||| |||| |||| ||| || || Sbjct 162552 TGCAAACAGATCTCGCACTCTGGATGAGCCAACACCAACAAACATCTCTATAAACTCTGA 162611 Query 289146 AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || || || |||| ||| || ||||| || ||| | || | ||| || Sbjct 162612 GCCAGAGACGCTAAGAAATGGTACGCCGGCCTCGCCAGCAGTAGCCTTTGCTAAAAGAGT 162671 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 |||||||| ||||| || || |||| | | ||| | || | | || || || Sbjct 162672 TTTACCTGTACCAGGAGGACCAGACAATATAGCGCCCCTGGGAATAGTAGCACC--TAGT 162729 Query 289266 CTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 ||| | || | || || ||||| ||||| |||| |||| ||| || | || || Sbjct 162730 CTTTCAAATCTTTCCGGATCCTTTAGAAATTTCACAAATTCCACAATCTCCTCCTTGGCT 162789 Query 289324 TCATCA 289329 |||||| Sbjct 162790 TCATCA 162795 >seq13990 Length=315335 Score = 87.8 bits (96), Expect = 5e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 353914 CGACCATCCACAACCGACCATACTTCGGGGCAGAGTGCAGAATAGAATTCCCGCTGATGA 353973 |||||||| ||||| ||| ||||| || || || | ||||||| || | ||| Sbjct 157029 CGACCATCATCAACCTTCCACACTTCATTACAAAGAGCTTCAGAGAATTCGCGGTTGTGA 157088 Query 353974 GATATAATAATCACACCCCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCGAG 354033 | | ||| | ||||| ||| ||| ||| || || || |||||||| || || Sbjct 157089 GTAACAATGACGACACCACCACCATATTCACGAATAGCAGTAGCAAGAGCACCGAGAGAT 157148 Query 354034 TCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACATT 354093 || || || | | ||||||||||||||||||| | || | ||| |||| ||||||| Sbjct 157149 TCGCGATCCAAGTAATTAGTAGGTTCGTCAAGAACCAGCATGTGAGGCTTATTCCACATG 157208 Query 354094 GCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 || ||| | | ||| | || ||||| || || || || || Sbjct 157209 GCAGCACCAATAACGAGTTTGACCTTTTGACCACCAGAAAG 157249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471522722723669