Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7507 138 1e-26 seq802 127 2e-23 seq11881 105 8e-17 seq8374 105 8e-17 >seq7507 Length=243275 Score = 138 bits (152), Expect = 1e-26 Identities = 187/258 (72%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || ||||| ||||| ||||||| |||||| || || |||||||||| |||||| || || Sbjct 204209 TGATCGACATAGCGGGCCGTGTTGTTAAACACACGCAGCATGGGCAAGAGGCCATTAGAG 204268 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | ||||||||| || || | ||| | || | || || || ||||| |||||| Sbjct 204269 TAGCCGTTGGTACCAGCAATGTAAGAACCAGTAGCACGGACATTGTGAATATTCAAGCCG 204328 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| || |||| ||| || || | || || ||||| || |||||||| || ||| Sbjct 204329 ATGCCACCAGCCGTCTTTGAAATTTGAGCACAGATCTTGAGGGTTTCGTAGATACCTTCG 204388 Query 1630246 ATCGAGTCGGCCTTCAT-GTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 |||||||| | ||||| ||| || ||||| || || || ||| ||| | | ||||| Sbjct 204389 ATCGAGTCCTCTTTCATGGTCAACAAGAAA-CAAGAGGACAGTTGTGGGCGAGGAGTGCC 204447 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 || ||||| | ||||| Sbjct 204448 AGCATTGAACAAGGTGGG 204465 >seq802 Length=2293163 Score = 127 bits (140), Expect = 2e-23 Identities = 181/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 1630078 CGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCGTTGGTG 1630137 |||||||||||||| || ||||| ||||| || |||| |||||||| ||| || ||| Sbjct 2026614 CGCGCCGTGTCGTTGAACACGCGCAGCATAGGAACGATACCGTTGGAGGTGCCATTCGTG 2026673 Query 1630138 CCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCC 1630197 || || | ||||| ||| | | | || | ||| || ||||| ||||| ||||| || Sbjct 2026674 CCAGCAATGTAGGAGCCTGAGCCACGGATCTTTTGAAAGGCAACGCCGACACCGCCCGCG 2026733 Query 1630198 GACTTGGAGATGAGCGCGCACTGTT--TGAGCGTGTCGTAGATGCCCTCGATCGAGTCGG 1630255 | |||||| || || |||| | | | ||||| |||||||||||||| || ||| Sbjct 2026734 GCCTTGGATAT--ACGTGCACAGGTCGTCAGCGTATCGTAGATGCCCTCAATACTGTCAT 2026791 Query 1630256 CCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCGGCGTTGAAGA 1630315 | ||| | || || ||||| ||| ||| || | | |||||| |||||||| | Sbjct 2026792 CGCGCATTTGGACAAGGAAGCAGCTCGACAGTTGAGGTTTGGGCGTGCCAGCGTTGAACA 2026851 Query 1630316 GCGTGGGCGTCGC 1630328 | |||||||| || Sbjct 2026852 GAGTGGGCGTGGC 2026864 >seq11881 Length=132943 Score = 105 bits (116), Expect = 8e-17 Identities = 184/268 (69%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||||| ||| || ||||| | || |||||||||||||||||| Sbjct 44855 CCCTCGTCACGAGAGATCAATTCATTAGAAAAGGTCAACCCAGGCATGAGGCCGCGCTTC 44914 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| || |||| | || ||| ||||| ||||| || |||||||| ||||| Sbjct 44915 TTGAGCCAGAAAATGGAGGCAAATGAGCCTGAGAAGAAGATACCTTCGACGGCAGCAAAA 44974 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | | | || ||||| | || ||| |||||| || | |||||| Sbjct 44975 GCAACTAATCTTTCAGCAAAAGAATCATTGCC------AGAGATCCATTTGAAGGCCCAG 45028 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 || |||||| || | | | || | || || |||||| |||||| |||||||| Sbjct 45029 TCAGCCTTTCTCTTGATACAGGGGATGGTTTCAATGGCGTCAAAGAGCATCTCCTTTTCA 45088 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCA 869447 || ||||||| ||| ||||| |||| Sbjct 45089 GCGCTATCCTTGATATAAGTGTCAATCA 45116 >seq8374 Length=42181 Score = 105 bits (116), Expect = 8e-17 Identities = 211/303 (70%), Gaps = 11/303 (4%) Strand=Plus/Minus Query 733021 TGGTGACGCGCAACGGCGACGGCGCCAACGCCGTCAAGAT-CGTGACGCGCGCCATGCGC 733079 || ||||| |||| |||||| ||| |||||| | |||| | || ||| ||| Sbjct 10917 TGCTGACGACCAACCAGGACGGCCTCAAGTTTGTCAAGGTGCGTGTC-CGGTCCACGCGT 10859 Query 733080 CAGCCCGAGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGC 733139 || || |||||||||| | | ||||| ||||||||||||||||| | || | Sbjct 10858 GTCCCTCAGATGGGCGACAAGTTTGCCTCGCGTCACGGCCAAAAGGGCACGATTGGTA-- 10801 Query 733140 GTGCGCTCCACCGAGGAC-ATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGT 733198 || || | | |||| || || | || | || || ||| |||||||||| || | Sbjct 10800 -TGACCTACCGCCAGGAGGATTTCCCGTTCTCGGC-CGAGGGCATCACGCCCGACCTCAT 10743 Query 733199 GATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCT 733258 |||||||||||||| || ||||| || ||||| || || | ||| | ||| || || Sbjct 10742 CATCAACCCGCACGCTATTCCGTCTCGTATGACAATTGGGCACATGATTGAGTGTCTGCT 10683 Query 733259 GGGCAAGGTGGCCTGCCGC-GA-GGGCTACATCGGCGACGGCACGCCCTTTGGCGGCGTC 733316 |||||||||| | | ||| || ||| || ||||||| |||||||||| || ||| Sbjct 10682 GGGCAAGGTGTC--GACGCTGACAGGCAACGAAGGCGACGCCACGCCCTTTACCGATGTC 10625 Query 733317 ACC 733319 ||| Sbjct 10624 ACC 10622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105855954551929