Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7507 149 1e-29 seq11881 132 8e-25 seq802 129 9e-24 seq8162 127 3e-23 seq15039 123 4e-22 seq11379 114 2e-19 seq8374 113 7e-19 >seq7507 Length=243275 Score = 149 bits (164), Expect = 1e-29 Identities = 187/257 (73%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || ||||||||||| ||||||| |||||| || || |||||||||| ||||| || || Sbjct 204209 TGATCGACATAGCGGGCCGTGTTGTTAAACACACGCAGCATGGGCAAGAGGCCATTAGAG 204268 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | ||||||||| || || | ||| | || | || || || ||||| |||||| Sbjct 204269 TAGCCGTTGGTACCAGCAATGTAAGAACCAGTAGCACGGACATTGTGAATATTCAAGCCG 204328 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| || |||| ||| || || | || || | || || || |||||||| || ||| Sbjct 204329 ATGCCACCAGCCGTCTTTGAAATTTGAGCACAGATCTTGAGGGTTTCGTAGATACCTTCG 204388 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 |||||||| | |||||| ||||| || || || || ||| ||||| | ||||| Sbjct 204389 ATCGAGTCCTCTTTCATGGTCAACAAGAAACAAGAGGACAGTTGTGGGCGAGGAGTGCCA 204448 Query 2073781 GCATTGAAGAGCGTGGG 2073797 |||||||| | ||||| Sbjct 204449 GCATTGAACAAGGTGGG 204465 >seq11881 Length=132943 Score = 132 bits (146), Expect = 8e-25 Identities = 227/330 (69%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| ||| ||||||||| || |||| | || |||||||||||||||||| Sbjct 44855 CCCTCGTCACGAGAGATCAATTCATTAGAAAAGGTCAACCCAGGCATGAGGCCGCGCTTC 44914 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| || |||| || ||| ||||| ||||| || |||||||| ||||| Sbjct 44915 TTGAGCCAGAAAATGGAGGCAAATGAGCCTGAGAAGAAGATACCTTCGACGGCAGCAAAA 44974 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | || | | || ||||||| || ||| |||||| || | ||||| Sbjct 44975 GCAACTAATCTTTCAGCAAAAGAATCATTGCC------AGAGATCCATTTGAAGGCCCAG 45028 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || |||||| || | | |||| | || || |||||| |||||| ||||| || Sbjct 45029 TCAGCCTTTCTCTTGATACAGGGGATGGTTTCAATGGCGTCAAAGAGCATCTCCTTTTCA 45088 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | ||||||| || ||||| || | || ||| ||||| | || |||||||| Sbjct 45089 GCGCTATCCTTGATATAAGTGTCAATCAAAAGACTGTATGTCTCAGCATGAATGTTTTCA 45148 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAGTTG 794670 |||||||| ||||| ||||| || || ||| Sbjct 45149 ATGGCGATTTGGAAACCATAGAAACATTTG 45178 >seq802 Length=2293163 Score = 129 bits (142), Expect = 9e-24 Identities = 205/294 (70%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 2073546 GACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCC 2073605 |||| | |||||||||||||| || ||||| ||||| || || | |||||||| ||| Sbjct 2026607 GACAAAACGCGCCGTGTCGTTGAACACGCGCAGCATAGGAACGATACCGTTGGAGGTGCC 2026666 Query 2073606 GTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCC 2073665 || ||||| || | ||||| ||| ||| | || | ||| || ||||| ||||| || Sbjct 2026667 ATTCGTGCCAGCAATGTAGGAGCCTGAGCCACGGATCTTTTGAAAGGCAACGCCGACACC 2026726 Query 2073666 GCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCGATCGA 2073725 ||| || |||||||| || | || || | ||||||| |||||||||||||| || Sbjct 2026727 GCCCGCGGCCTTGGATATACGTGCACAGGTCGTCAGCGTATCGTAGATGCCCTCAATACT 2026786 Query 2073726 GTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCGGCATT 2073785 ||| | ||| | | || ||||| ||| ||| || | |||||| || || Sbjct 2026787 GTCATCGCGCATTTGGACAAGGAAGCAGCTCGACAGTTGAGGTTTGGGCGTGCCAGCGTT 2026846 Query 2073786 GAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||| || |||||||| || ||| | ||| ||||||| |||||||| Sbjct 2026847 GAACAGAGTGGGCGTGGCATGCGTAAAATACTTGGAGGACATGAGATCGTAGGT 2026900 >seq8162 Length=159707 Score = 127 bits (140), Expect = 3e-23 Identities = 184/257 (72%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || |||||||| ||| |||| ||||| || | | Sbjct 52586 TGTACTTGGTGACAGCCTTGGTACCTTCAGAGACGGCATGCTTGGCAAGTTCACCAGGAA 52645 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || || || ||||| || || | || ||| ||||||||| || Sbjct 52646 GGATGAGACGAACAGCAGTTTGGATTTCACGAGAAGAAATGGTGGAGCGCTTGTT-GTAA 52704 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| || | | | || || || | || || ||||| || |||||| Sbjct 52705 GCAGCCAACTTGGAGGCTTCAGAGGCAATACGCTCAAAGATATCATTGACGAAGGAGTTC 52764 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || ||| || || || ||||| | |||||| Sbjct 52765 AAGATGGACATGGCCTTGTTGGAGATACCAGTGTCAGGATGAACTTGCTTCAAGACCTTG 52824 Query 1485709 TAAACAAAGGACGAGTA 1485725 |||| |||| || || Sbjct 52825 TAAATGTAGGAAGAATA 52841 Score = 123 bits (136), Expect = 4e-22 Identities = 174/242 (72%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || |||||||| ||| |||| ||||| || | | Sbjct 63541 TGTACTTGGTGACAGCCTTGGTACCTTCAGAGACGGCATGCTTGGCAAGTTCACCAGGAA 63482 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || || || ||||| || || | || ||| ||||||||| || Sbjct 63481 GGATGAGACGAACAGCAGTTTGGATTTCACGAGAAGAAATGGTGGAGCGCTTGTT-GTAA 63423 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| || | | | || || || | || || ||||| || |||||| Sbjct 63422 GCAGCCAACTTGGAGGCTTCAGAGGCAATACGCTCAAAGATATCATTGACGAAGGAGTTC 63363 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || ||| || || || ||||| | |||||| Sbjct 63362 AAGATGGACATGGCCTTGTTGGAGATACCAGTGTCAGGATGAACTTGCTTCAAAACCTTG 63303 Query 1485709 TA 1485710 || Sbjct 63302 TA 63301 >seq15039 Length=557031 Score = 123 bits (136), Expect = 4e-22 Identities = 183/257 (71%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| ||||||||||| || ||||| |||||| |||| |||||||| | | Sbjct 314633 TGTATTTGGTGACAGCCTTGGTACCTTCAGAGACAGCGTGCTTGGCAAGTTCGCCAGGAA 314692 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || ||||| || || || || | ||||||| ||||||||| | Sbjct 314693 GAATGAGACGAACAGCGGTTTGAATTTCACGAGAAGAGATCGTGGAACGCTTGTTA-TAA 314751 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | || || | | |||| || || | || ||||| || || |||||| Sbjct 314752 GCAGCCAACTTGGAAGCTTCAGAGGCGATACGTTCAAAGATATCGTTAACGAAGGAGTTC 314811 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||| ||||| || || ||||| || ||||| | |||||| Sbjct 314812 AAGATGGACATGGCCTTGTTAGAGATACCAGTATCAGGGTGTACTTGCTTCAAGACCTTG 314871 Query 1485709 TAAACAAAGGACGAGTA 1485725 || | | | || ||||| Sbjct 314872 TAGATATAAGAGGAGTA 314888 >seq11379 Length=242 Score = 114 bits (126), Expect = 2e-19 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || |||||||| ||| |||| ||||| || | | Sbjct 11 TGTACTTGGTGACAGCCTTGGTACCTTCAGAGACGGCATGCTTGGCAAGTTCACCAGGAA 70 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || || || ||||| || || | || ||| ||||||||| || Sbjct 71 GGATGAGACGAACAGCAGTTTGGATTTCACGAGAAGAAATGGTGGAGCGCTTGTT-GTAA 129 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| || | | | || || || | || || ||||| || |||||| Sbjct 130 GCAGCCAACTTGGAGGCTTCAGAGGCAATACGCTCAAAGATATCATTGACGAAGGAGTTC 189 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 | ||| ||||| | ||||||||||| || ||| || || || ||||| Sbjct 190 AAGATGGACATGGCCTTGTTGGAGATACCAGTGTCAGGATGAACTTGCTT 239 >seq8374 Length=42181 Score = 113 bits (124), Expect = 7e-19 Identities = 250/365 (68%), Gaps = 15/365 (4%) Strand=Plus/Minus Query 653528 AAGCGCGACAAGTCGACCATCCTGCGCACCAACGAGGCCGCCACGGTGCACCGCGTCGTG 653587 |||||||| ||||| |||| | ||| ||| ||| | || ||| ||| || Sbjct 10975 AAGCGCGATGCCTCGACGCCCCTGAGATCCACAGAGACCGGTATCGTCGACCAAGTCATG 10916 Query 653588 GTGACGCGCAACGGCGACGGCGCCAACGCGGTCAAGAT-CGTCACCCGCGCCATGCGCCA 653646 ||||| |||| |||||| ||| |||||| | ||| || | ||| ||| Sbjct 10915 CTGACGACCAACCAGGACGGCCTCAAGTTTGTCAAGGTGCGTGTCCGGT-CCACGCGTGT 10857 Query 653647 GCCCGAGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGGCAGCGT 653706 || || |||||||||| | | ||||| ||||| ||||||||||| | || | | Sbjct 10856 CCCTCAGATGGGCGACAAGTTTGCCTCGCGTCACGGCCAAAAGGGCACGATTGGTA---T 10800 Query 653707 GCGCT--CGACCG-AGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGT 653763 | || || | | |||| | |||| ||| | || |||| |||||||||| || | Sbjct 10799 GACCTACCGCCAGGAGGATTTCCCGTTCTCGGC---CGAGGGCATCACGCCCGACCTCAT 10743 Query 653764 CATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCT 653823 ||||||||||||||| || ||||| || ||||| || || | ||||| ||| || || Sbjct 10742 CATCAACCCGCACGCTATTCCGTCTCGTATGACAATTGGGCACATGATTGAGTGTCTGCT 10683 Query 653824 GGGCAAGGTGGCCTGCCGC-GA-GGGCTACGTGGGCGACGGCACCCCGTTTGGCGGCGTC 653881 |||||||||| | | ||| || ||| ||| ||||||| ||| || ||| || ||| Sbjct 10682 GGGCAAGGTGTC--GACGCTGACAGGCAACGAAGGCGACGCCACGCCCTTTACCGATGTC 10625 Query 653882 ACCGT 653886 ||||| Sbjct 10624 ACCGT 10620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914583020989643