Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq15377 131 1e-25 seq513 116 3e-21 seq2291 100 2e-16 >seq15377 Length=116332 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| ||||| | ||||||||| ||||| || |||||||| || || | Sbjct 81296 CCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCTGAC 81237 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | | ||| || || | |||||| || ||| | ||||| | |||||| || || ||| Sbjct 81236 AACGAGCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGA 81177 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||||||||| | ||||| |||||| | || | |||| || |||||| Sbjct 81176 ATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACC 81117 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | ||| || ||||||||||| | || || || || || ||||| || Sbjct 81116 TCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATATT 81067 >seq513 Length=239887 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || ||||| |||||||||||||| || || || ||| Sbjct 208289 ACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAAAGAGTACGACC 208230 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| ||||| || | || | | ||| || || || |||||||| || || Sbjct 208229 ATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTT 208170 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||||| |||||| | || | || |||| ||| ||||| | || || Sbjct 208169 GTCTTGGATCTTTTGCTTGACATTATCAATCGTATCAGTGGATTCAACTTCTAATGTAAT 208110 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || |||||||| | || ||||| || || ||||| || Sbjct 208109 GGTCTTGCCAGTAAGAGTCTTAACGAAGATTTGCATATT 208071 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| || ||||| || || || || || || | || || ||| Sbjct 208517 ACGAAGTACCAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGAAAGAGTACGACC 208458 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| ||||| || | || | | ||| || || || ||||| || || || Sbjct 208457 ATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTT 208398 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||||| |||||| | || | | || | | ||| ||||| | || || Sbjct 208397 GTCTTGGATCTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAACGTAAT 208338 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||||| | ||||| || || |||||||| Sbjct 208337 AGTTTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 208302 >seq2291 Length=180 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | |||||| || ||| | ||||| | |||||| || || |||||||| |||||| Sbjct 156 TCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTG 97 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||||| |||||| | || | |||| || |||||| || | ||| || Sbjct 96 TCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTGATG 37 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| | || || || || || ||||| Sbjct 36 GTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385145786489817