Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7507 178 1e-39 seq513 118 1e-21 seq802 95.1 1e-14 seq15377 89.7 5e-13 seq2291 86.0 6e-12 >seq7507 Length=243275 Score = 178 bits (196), Expect = 1e-39 Identities = 448/669 (67%), Gaps = 13/669 (2%) Strand=Plus/Plus Query 149112 GGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACC 149171 || || | ||| |||||| | |||| | || |||| |||||| ||||| |||||| Sbjct 204014 GGACAGAAGAGAGACCACTCACCGTTATCTCTGACTCGCTCCATAAAGAGATCAGGCACC 204073 Query 149172 CAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGG 149231 || || || || | | ||||| || | || || || | ||| ||| || Sbjct 204074 CAAAGAGCATAAAACAAATCGCGGGCTCTAATTTCGTCCTTACCAAAGTTTTTGCGGAGA 204133 Query 149232 TTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTG 149291 | || | ||||||| || || ||||| || || | |||| |||| ||||| Sbjct 204134 TCCAGGAACATGAATATATCAGCATGCCAGGGTTCCAGATACATGGCGAAAGCGCCAGGA 204193 Query 149292 CGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGT 149348 ||||| || || || ||||| | ||| || ||||||||||||| || | ||| || Sbjct 204194 CGCTTATTACCACCTTGATCGACATAGCGGGCCGTGTTGTTAAACACACGCAGCATGGGC 204253 Query 149349 TCAATGCCACTGGCAGT-GCCGTTAGTAG-AGCTAATGCGACTGCCGCGCGCTCGCACTT 149406 | |||| | | ||| |||||| ||| ||| |||| | || || || || | Sbjct 204254 AAGAGGCCATTAG-AGTAGCCGTTGGTACCAGC-AATGTAAGAACCAGTAGCACGGACAT 204311 Query 149407 TGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGC 149465 |||| | || | ||||||||| || ||||| |||||| || || ||| ||| Sbjct 204312 TGTGAATATTCAAGCCGATGCCACCAGCCGT-CTTTGAAATTTGAGCACAGATCTTGAGG 204370 Query 149466 GTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATT 149525 || |||||| || ||||| ||| |||||||||| || || || ||| ||| | Sbjct 204371 GTTTCGTAGATACCTTCGATCGAGTCCTCTTTCATGGTCAACAAGAAACAAGAGGACAGT 204430 Query 149526 TGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGG 149585 || || | | ||||| || ||||| |||||| ||||| ||||| ||||| || Sbjct 204431 TGTGGGCGAGGAGTGCCAGCATTGAACAAGGTGGGACTGGCATGTGTGAAATAACGCTCT 204490 Query 149586 CTCATCATCTCGTACGACTCGA--GCACGCGGTCCATGTCATCGCCATGGATGCCTATGG 149643 ||| | | ||||| || | ||| ||| || || || | ||||||||| || | | Sbjct 204491 GACATTAGGTTGTACGTTTCTATGGCA-GCG-TCGATATCTTGGCCATGGATACCAACAG 204548 Query 149644 CGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGT 149703 |||| ||||| | || |||||| |||| ||| || |||||| | ||||||||||||| Sbjct 204549 CGACACGCATGATCAAATGCTGAGGTCTCTCGGCTACTTTGGAGTCGATTTTGAGCAAGT 204608 Query 149704 AGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAA 149763 | | || | ||||||| |||||||| | ||||| | || || ||| ||| | | Sbjct 204609 ACGAGCGCTCCAATGTCTTGAAGCCAAAGAAATTGTACTTGAAATCACGGTCGTAGATGA 204668 Query 149764 TGGCGGCGT 149772 |||||| || Sbjct 204669 TGGCGGAGT 204677 >seq513 Length=239887 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| |||||||| || | || ||| | || || | Sbjct 208507 AAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGAAAGAGTACGACCA-TCTTCTAA 208449 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| |||| || || || ||||| || || |||||||||||||| ||| Sbjct 208448 TTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGGAT 208389 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||||| | |||| | | ||||| | || || || | || | |||||||| Sbjct 208388 CTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAACGTAATAGTTTTGCC 208329 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| |||||||||||||| Sbjct 208328 AGTAAGAGTTTTGACGAAAATCTGCAT 208302 Score = 102 bits (112), Expect = 8e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| |||| || || || ||||| || || || ||||||||||| |||| Sbjct 208219 TGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGGATC 208160 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 |||||||||| | |||| ||| || |||| || || || | || | ||| ||||| Sbjct 208159 TTTTGCTTGACATTATCAATCGTATCAGTGGATTCAACTTCTAATGTAATGGTCTTGCCA 208100 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || ||||| || ||||| Sbjct 208099 GTAAGAGTCTTAACGAAGATTTGCAT 208074 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| |||| || || || ||||| || || || |||||||| || || Sbjct 203253 TGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTATCTTGAATT 203194 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 |||||||||| | |||| | | ||||| | || || || | || | ||||| || Sbjct 203193 TTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTAATAGTTTTACCA 203134 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || |||||||||||||| Sbjct 203133 GTAAGAGTCTTGACGAAAATCTGCAT 203108 >seq802 Length=2293163 Score = 95.1 bits (104), Expect = 1e-14 Identities = 350/537 (65%), Gaps = 15/537 (3%) Strand=Plus/Plus Query 149250 TCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCCCTGG 149306 ||| | ||||| ||||| | ||||| || | || || || || ||||||||| Sbjct 2026545 TCCACATGCCAAGGCTCCAGGTACATGGCAAAGTTACCATTACGTTTTCCGCCGCCCTGC 2026604 Query 149307 TCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTG 149366 ||| ||| || ||| ||| ||||| || | |||||| | || || ||| ||| Sbjct 2026605 GTGACAAAACGCGCCGTGTCGTTGAACACGCGCAGCATAGGAACGATACCGTTGGAGGTG 2026664 Query 149367 CCGTTAGTAG-AGCTAATGCGACTGCC-GCGCGCTCGCACTTTGTGCACGTTGACGCCGA 149424 || || || ||| |||| ||| | || | || | || || | | ||||||| Sbjct 2026665 CCATTCGTGCCAGC-AATGTAGGAGCCTGAGC-CACGGATCTTTTGAAAGGCAACGCCGA 2026722 Query 149425 TGCCGCCGCCGTACTTTGAGATGGCCGCGCAG-TCGCCGAGCGTCGAGTAGATGCCCTCG 149483 ||||| || ||| || || || ||| ||| | ||||| |||||||||||| Sbjct 2026723 CACCGCCCGCGGCCTTGGATATACGTGCACAGGTCGTC-AGCGTATCGTAGATGCCCTCA 2026781 Query 149484 ATGCTG---TCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTG 149540 || ||| |||||| | ||| || || ||||| ||| ||| || ||||| Sbjct 2026782 ATACTGTCATCGCGCAT-TTGGACA--AGGAAGCAGCTCGACAGTTGAGGTTTGGGCGTG 2026838 Query 149541 CCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTAC 149600 || || ||||| ||||| |||| || |||||||| || | ||| | ||||| Sbjct 2026839 CCAGCGTTGAACAGAGTGGGCGTGGCATGCGTAAAATACTTGGAGGACATGAGATCGTAG 2026898 Query 149601 GACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATA 149660 | || | ||| || | ||| |||| |||||||| | || || ||||| | ||| Sbjct 2026899 GTCTTAAAGGCGCTCTCGAGATCAGCGCCGTGGATGCCCAGAGCCACACGCATAATCATG 2026958 Query 149661 TGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTC 149720 | ||| || |||||| | | |||| || || | || ||||| | || || || Sbjct 2026959 TACTGAGGACGCTCCACAATCTTGTCGTTGATCTTAAACAGGTAGCTGCGCTCCAGCGTT 2027018 Query 149721 TTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGATC 149777 ||| |||||||| | ||| | ||||||| | | | |||||||||| |||||| Sbjct 2027019 TTGAAGCCAAAGAAATTGAATGCAAAGTCTCTTTCAGGCACAATGGCGGCATCGATC 2027075 >seq15377 Length=116332 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || ||||| || || || | | ||| || | || || || Sbjct 81266 GTTGATTCCTTCTGAATGTTGTAGTCTGACAACGAGCGCCCGTCTTCTAATTGTTTACCG 81207 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || |||||||| ||||| || ||||| ||||| ||||||||||||| Sbjct 81206 GCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGGATCTTTTGCTTG 81147 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| |||||| | || || || | |||| ||||||||| || || || Sbjct 81146 ACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTGATGGTTTTGCCAGTAAGTGTC 81087 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||| ||||| Sbjct 81086 TTGACGAAAATTTGCAT 81070 >seq2291 Length=180 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 || |||||||| ||||| || ||||| ||||| |||||||||||||| | |||| Sbjct 126 CGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATT 67 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 |||||| | || || || | |||| ||||||||| || || || || |||||||| Sbjct 66 CTGTCGGATGATTCTACCTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATT 7 Query 133656 TGCAT 133660 ||||| Sbjct 6 TGCAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483326309361880