Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq8767 214 4e-50 seq7507 96.9 8e-15 seq15059 89.7 1e-12 seq14752 89.7 1e-12 >seq8767 Length=28599 Score = 214 bits (236), Expect = 4e-50 Identities = 563/855 (66%), Gaps = 11/855 (1%) Strand=Plus/Plus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAA 110366 || || || | |||||||||||| ||||| | || ||| |||| ||| || | ||| Sbjct 15706 TTCGGCTTTAGAACTCTTGAACGCTCTTATCTTCTCCGTATCAACGGCAAGGTTGCTGAG 15765 Query 110367 CGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCAT--GGACATGATATTAAAG 110424 | |||||||| || || | |||||||| |||||||||||| |||| |||||| | | Sbjct 15766 AGGCCTCAACATTTGATTATGCGTGTTGCCATTGGTATTCATCCGGAC--GATATTGATG 15823 Query 110425 CTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCC 110484 | | | |||| ||| || | | | ||||| | ||| ||||||| |||||| | Sbjct 15824 CCGCAGTCGAATCTTACCATCTCATGTCTCAAAAGTATTTTATCCATGCTAGTCCTACTC 15883 Query 110485 TATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAAT--TAA 110542 | ||||| || || ||| | | || | | ||||| ||||| | || | || Sbjct 15884 TTTTTAATGCTGGTACTCCTCGTCCTCAGCTATCGTCTTGTTTTCTATT--GACTCCCAA 15941 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 || ||||| |||||||||| | ||| |||| || | | || || || | Sbjct 15942 GGAAGATTCGGTTGAAGGTATCTTTGAGACTCTCAAGCGTTGTTCCAAGATCTCAAAGAG 16001 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 | |||| || |||||| | |||| ||| | || || | | | || | || || Sbjct 16002 CGCTGGTGGTATTGGTTTAAACGTCCATAACATCCGTGCTACTGATTCATACATTGCCGG 16061 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || |||| | ||| | | || ||| | | ||||| ||| ||||| Sbjct 16062 GTCTAATGGTGAAGCTCATGGTTTATTACCCATGCTCAAGGTCTTTAACAGTACTGCTCG 16121 Query 110723 ATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 || ||| |||||||||| |||| | |||| | |||||||| || ||||| ||||| Sbjct 16122 CTACGTGGATCAAGGTGGCAATAAGCGTCCTGGCGCCTTTGCTATTTACCTCGAGCCTTG 16181 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839 |||| | ||| ||||| ||| | || ||||| |||||| || ||| ||| || Sbjct 16182 GCATGCCGATGTATTTATGTTCCTGGATCTTCGCAAAAATTTTGGCCGTGATGAAATTAG 16241 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 |||| | || | || ||||| ||||||| | ||| | |||||||| || ||| |||| Sbjct 16242 AGCAAGGGACATGTTCTATGCTCTGTGGATCCCTGATCTTTTCATGAAGCGGGTTGAAGA 16301 Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGG 110959 |||||| ||||| || | |||||| || | || ||| ||| | |||| | || Sbjct 16302 AAATGGTCAATGGTCGCTCTTCTGTCCTAATGAAGCACCCGGTTTATGTAATGTTTGGGG 16361 Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAAT 111019 | || ||||||| |||| ||||| |||||||| |||| |||| || || Sbjct 16362 CGATGAATTTGAAGCTCTTTTTGAAAAGTATGAAAAGCAAGGTCTTGCTCGCGAAACCAT 16421 Query 111020 TCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTA 111079 || |||||| |||||||||| ||| | || | ||| |||||||| | ||||| Sbjct 16422 GCCTGCTCAAAAACTTTGGTTTGCCATCATGGAGGCTCAAACGGAAACTGGGAATCCTTT 16481 Query 111080 TATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139 | | | || ||||| | || ||||| || || ||| || || || || || Sbjct 16482 TTTACTCTACAAAGACGCTTGCAACCGCAAGAGCAACCAGCAGAACTTGGGTACCATCAA 16541 Query 111140 GTCTAGTAATTTGTG 111154 | |||||| ||||| Sbjct 16542 ATGTAGTAACTTGTG 16556 >seq7507 Length=243275 Score = 96.9 bits (106), Expect = 8e-15 Identities = 306/464 (66%), Gaps = 13/464 (3%) Strand=Plus/Minus Query 110703 GTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTT 110759 || || ||| |||| || ||||| |||||||||| |||| | |||| | || Sbjct 204240 GTGTTTAACAACACGGCCCGCTATGTCGATCAAGGTGGTAATAAGCGTCCTGGCGCTTTC 204181 Query 110760 GCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAAT 110819 || || ||||| ||||| |||||| | |||||||| ||| | || || || ||||| Sbjct 204180 GCCATGTATCTGGAACCCTGGCATGCTGATATATTCATGTTCCTGGATCTCCGCAAAAAC 204121 Query 110820 CAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTA 110879 || || ||| ||||| || ||||| |||||||| | ||| | | ||| | Sbjct 204120 TTTGGTAAGGACGAAATTAGAGCCCGCGATTTGTTTTATGCTCTTTGGGTGCCTGATCTC 204061 Query 110880 TTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCG-TTCTCC 110938 || ||| | || || ||| || || ||||||||| | ||||| || || |||| Sbjct 204060 TTTATGGAGCGAGTCAGAGATAACGGTGAGTGGTCTCTCTTCTGTCC-CAACGAGGCTCC 204002 Query 110939 TGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTT-TACGAAAAATATGAAAAAG 110997 ||| |||| ||| || | || | || || |||||||| | ||| | ||||| | Sbjct 204001 TGGCCTATGTGAAGTGTGGGGCGATGA-ATTCAAGACCTTGTTTGAACAGTATGAGCGTG 203943 Query 110998 AAGGCA-AGTTTCGCAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATC 111055 |||||| || | |||| | || | || ||| | ||||||| ||| | || | Sbjct 203942 AAGGCAGAGCTAGAGAAACCA--TCAAGGCACAAAAGCTTTGGTATGCCATCTTGGAGGC 203885 Query 111056 ACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAA 111115 ||| |||||| || | ||||| || | ||||| ||| | ||| | || || Sbjct 203884 TCAAACTGAAACCGGTAATCCTTTCATGCTCTATAAGGATGCTTGCAATAGAAAGAGCAA 203825 Query 111116 TCAAATGAATTTAGGAACAATTAAGTCTAGTAA--TTTGTGCTG 111157 ||| |||| | || || || |||| |||||| ||||| ||| Sbjct 203824 CCAACAGAATCTGGGTACTATCAAGTGTAGTAACCTTTGTACTG 203781 >seq15059 Length=189487 Score = 89.7 bits (98), Expect = 1e-12 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 304895 CATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCTCAAAGATCT 304954 |||||||| || | ||||| ||||| |||||||| ||||| | |||| ||| Sbjct 16757 CATATTGCCACTTATATGGACAATGATATTGCTGGTCAACCTCAGGCCTTGCAAAAGTCT 16698 Query 304955 GGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGGT 305014 ||||||||| | ||| ||| | || |||||||||| || || ||| | || || Sbjct 16697 GGCAGACCTCTCAAGTCAATTCGTGCCCGTCTTAAAGGTAAGGAAGGCCGTCTGCGTGGC 16638 Query 305015 AATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCAC 305061 ||||| ||||| |||||||| ||||| |||| | | ||| ||||| Sbjct 16637 AATCTTATGGGTAAACGTGTGGATTTCTCTGCACGTACTGTCATCAC 16591 >seq14752 Length=160396 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 131862 TTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTT 131921 |||| ||||||||| ||| || ||||| |||||||| || | || ||||||||| Sbjct 137632 TTGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTTTCTGGATCGTTTGCCTCTATCTTTT 137691 Query 131922 GGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAG 131981 |||| ||||||||||| || |||||||| | | | || ||| ||||||| | | | Sbjct 137692 GGCTCAAGAAGCGTGGTTTAATGCCTGGTTTGACTCTTTCTAATGAATTCATTACTCGTG 137751 Query 131982 ATGAAGCATTGCATACTGAATTTG 132005 |||||| | ||| |||| |||| Sbjct 137752 ATGAAGGCCTACATGCTGATTTTG 137775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186575023168157