Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq513 93.3 4e-14 seq13444 82.4 7e-11 >seq513 Length=239887 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | || || || || || |||||||| | ||||| |||||| Sbjct 208510 ACCAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCTGAAAGAGTACGACCATCTTCT 208451 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | || || |||| | || ||||| ||||| ||||| || |||||||| || || Sbjct 208450 AATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 208391 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||||| || | | || | ||||||| | || ||||| | ||| | ||||| Sbjct 208390 ATCTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAACGTAATAGTTTTG 208331 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | |||||||||||| Sbjct 208330 CCAGTAAGAGTTTTGACGAAAATCTGCAT 208302 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| | || || |||| | || ||||| ||||| ||||| || || ||||| || Sbjct 203263 ATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTT 203204 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| ||||||||| || | | || | ||||||| | || ||||| | || | Sbjct 203203 ATCTTGAATTTTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTAAT 203144 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| ||||| || | |||||||||||| Sbjct 203143 AGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 203108 >seq13444 Length=200645 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 148266 GCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAA-CTTGAT 148324 ||||||||| | ||||| || ||||| ||||||||||| || || ||| ||| |||| | Sbjct 117108 GCCGTGAATCGCGAGCGCAACACGCATCAGCATGTGCTGCGGACGCTCGACAATCTTG-T 117050 Query 148325 TGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAA 148384 | || || | ||||| | ||||| || ||| | |||||||| || | |||| Sbjct 117049 CGCCAATTTTCATGAGATAATTCTGCTCGAGCGTCTTGAAGCCAAAGTAATTAAAGTCAA 116990 Query 148385 AATCTAGCTCGTAAGCGATGGCCGCAT 148411 |||| ||| |||| ||||||| |||| Sbjct 116989 AATCGCGCTGGTAATCGATGGCAGCAT 116963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476518040383320