Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq8374 107 3e-17 seq802 100 4e-15 seq15039 86.0 9e-11 >seq8374 Length=42181 Score = 107 bits (118), Expect = 3e-17 Identities = 174/243 (72%), Gaps = 13/243 (5%) Strand=Plus/Plus Query 1600502 TCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCC-TC-GCGGCAGGCCA 1600559 ||||||||||| || |||||||||| ||||||| | | ||| || ||| | | || Sbjct 10617 TCGACGGTGACATCGGTAAAGGGCGTGGCGTCGCCTTCGTTGCCTGTCAGCGTC--GACA 10674 Query 1600560 CCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCG 1600619 |||||||||| || ||| ||||| | || || ||||| || ||||| || ||||||| Sbjct 10675 CCTTGCCCAGCAGACACTCAATCATGTGCCCAATTGTCATACGAGACGGAATAGCGTGCG 10734 Query 1600620 GGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTC--GGT 1600677 ||||||| | | |||||||||| || || | ||| | || | ||||| || Sbjct 10735 GGTTGATGATGAGGTCGGGCGTGATGCCCTCG---GCCGAGAACGGGAAATCCTCCTGGC 10791 Query 1600678 GG-AGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCCCA 1600736 || || || | || | ||||||||||||||||| ||||| | | |||||||||| Sbjct 10792 GGTAGGTCA---TACCAATCGTGCCCTTTTGGCCGTGACGCGAGGCAAACTTGTCGCCCA 10848 Query 1600737 CCT 1600739 || Sbjct 10849 TCT 10851 >seq802 Length=2293163 Score = 100 bits (110), Expect = 4e-15 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 260000 ATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGC 260059 || ||||||||||| || ||||| | | || || | || |||||||| || ||||| Sbjct 2026783 ATTGAGGGCATCTACGATACGCTGACGACCTGTGCACGTATATCCAAGGCCGCGGGCGGT 2026724 Query 260060 ATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGC 260119 |||| ||||| || ||| | || | | | ||| ||||| | || ||||| || ||| Sbjct 2026723 GTCGGCGTTGCCTTTCAAAAGATCCGTGGCTCAGGCTCCTACATTGCTGGCACGAATGGC 2026664 Query 260120 CAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCG 260169 |||||||| | || || ||||| ||||| || |||||||||||||| Sbjct 2026663 ACCTCCAACGGTATCGTTCCTATGCTGCGCGTGTTCAACGACACGGCGCG 2026614 >seq15039 Length=557031 Score = 86.0 bits (94), Expect = 9e-11 Identities = 167/244 (68%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | |||||||||||| | ||||| || ||||| || ||| || | Sbjct 314888 TACTCCTCTTATATCTACAAGGTCTTGAAGCAAGTACACCCTGATAC---TGG--TAT-C 314835 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||||| ||| ||||||| || || ||||| || | || || |||| | Sbjct 314834 TCTAACAAGGCCATGTCCATCTTGAACTCCTTCGTTAACGATATCTTTGAACGTATCGCC 314775 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 | || || |||| | |||||||| ||||||| | || || || Sbjct 314774 TCTGAAGCTTCCAAGTTGGCTGCTTATAACAAGCGTTCCACGATCTCTTCTCGTGAAATT 314715 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 || ||||| || || || || | | |||||||| |||| |||||| ||||| || || Sbjct 314714 CAAACCGCTGTTCGTCTCATTCTTCCTGGCGAACTTGCCAAGCACGCTGTCTCTGAAGGT 314655 Query 725139 ACCA 725142 |||| Sbjct 314654 ACCA 314651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176302982609194