Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq15377 163 3e-35 seq2291 114 1e-20 seq513 109 6e-19 seq7507 105 7e-18 seq802 87.8 2e-12 >seq15377 Length=116332 Score = 163 bits (180), Expect = 3e-35 Identities = 185/243 (76%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || || | ||| || || ||||| |||||||| |||||||||||||| | | Sbjct 81296 CCACCTCTTAGACGAAGCACTAGATGAAGCGTTGATTCCTTCTGAATGTTGTAGTCTGAC 81237 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 |||| | | ||| || | ||||| || ||||| |||||||| ||||| || || || Sbjct 81236 AACGA-GCGCCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGG 81178 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||| || ||||| ||||| || | | ||||||| ||||| || Sbjct 81177 AATACCTTCTTTGTCTTGGATCTTTTGCTTGACATTATCAATTCTGTCGGATGATTCTAC 81118 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT-TTTGTTT--TT 134722 || | ||| |||||||| || || | || || |||||||||||||| ||||||| || Sbjct 81117 CTCCAAAGTGATGGTTTTGCCAGTAAGTGTCTTGACGAAAATTTGCATATTTGTTTACTT 81058 Query 134723 GTT 134725 ||| Sbjct 81057 GTT 81055 >seq2291 Length=180 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 ||||| || ||||| |||||||| ||||| || || || || |||||||| ||||| || Sbjct 147 TGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGGATC 88 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 ||||| ||||| || | | ||||||| ||||| || || | ||| |||||||| || Sbjct 87 TTTTGCTTGACATTATCAATTCTGTCGGATGATTCTACCTCCAAAGTGATGGTTTTGCCA 28 Query 134688 GTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || |||||||||||||| Sbjct 27 GTAAGTGTCTTGACGAAAATTTGCAT 2 >seq513 Length=239887 Score = 109 bits (120), Expect = 6e-19 Identities = 166/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || || ||||||||||||||||| ||||| | Sbjct 208300 CCACCACGGAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCTAAA 208241 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || | || ||||| || ||||| | ||| || || || || || Sbjct 208240 AGAGTACGACCATCTTCTAATTGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGA 208181 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || ||||| ||||| || | || || | ||||| || Sbjct 208180 ATACCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGTATCAGTGGATTCAACT 208121 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT-TTTGTTT 134720 || | |||||||| || || || | ||| |||||||| |||||||| |||| || Sbjct 208120 TCTAATGTAATGGTCTTGCCAGTAAGAGTCTTAACGAAGATTTGCATATTTGATT 208066 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 || ||||| || ||||| | ||| || || || || || || ||||| || ||||||||| Sbjct 203253 TGCTTGCCGGCGAAAATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTATCTTGAATT 203194 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 ||||| ||||| || | | |||| ||||| || || | ||||| |||||||| Sbjct 203193 TTTTGCTTGACATTATCAATCATATCGGTAGATTCAACTTCTAATGTAATAGTTTTACCA 203134 Query 134688 GTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| || |||||||| ||||| Sbjct 203133 GTAAGAGTCTTGACGAAAATCTGCAT 203108 >seq7507 Length=243275 Score = 105 bits (116), Expect = 7e-18 Identities = 400/618 (65%), Gaps = 16/618 (3%) Strand=Plus/Minus Query 8708 AATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACG 8767 |||| ||| |||| || | || | || || |||| || || || ||||||||| Sbjct 203426 AATTTGGCCCGTATGAGACATATGAAGGTAGTCCTGTTTCCCAAGGCATTCTGCAATACG 203367 Query 8768 ACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGAT--TTGAAACGCAAAAT 8825 |||||||||||||||| || || ||| | ||| ||||| || || |||||| || || Sbjct 203366 ACATGTGGAATGTCACACCTACTTCTCTTTGGGATTGG-GC-ATCCTTGAAAGAAAAGAT 203309 Query 8826 TGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGC 8885 ||| | ||| | || || || || ||| | ||| ||||| || ||| | || | Sbjct 203308 TGCAAATCACGGCGTCCGTAACTCCCTCTTGCTTGCTCCTATGCCTACTGCCTCAACCTC 203249 Query 8886 TCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACG 8945 |||||| ||||| |||||||| ||||||||| | ||| ||| |||| |||| Sbjct 203248 TCAAATCATGGGCTTCAACGAATGCTTTGAGCCCTACACATCAAACTTGTATACCCGACG 203189 Query 8946 AGTGTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATCGAAGC 9005 || | || || || || ||| | || | | ||| || || ||| ||||| Sbjct 203188 TGTTCTTGCTGGTGAATTCCAAATTGTAAACCCTTGGTTGCTGAAGGATTTGGTCGAAAT 203129 Query 9006 GGGCGTTT---ACGACGACAAAATGCGCGATGCCATCGTGGAAGCCAACGGCAGCGTTCA 9062 ||| ||| |||| |||| | | | ||| ||| || | ||| | || Sbjct 203128 GGGTCTTTGGAACGAGGACATCAAGAAC-ATG--ATCATGTCTGATGGTGGCTCTATCCA 203072 Query 9063 GAACATTGACGCGGTGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAA 9122 ||||| | | |||||| | | || || |||||||||| || ||||| ||| Sbjct 203071 AAACATCCCTGGCATCCCTCAAAAGTTGAAGGACATGTATAAAACTGTCTGGGAGCTGAG 203012 Query 9123 GCAAAGCACGCTGATCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATC 9182 || | || || | | |||||||| ||| | || |||||||| |||||||||||| Sbjct 203011 CCAGCGTACCTTGGTTGATATGGCTGCTGATCGTGGTGCTTTTATCGATCAGAGTCAAAG 202952 Query 9183 TTTTAACGTGTTCGTAGCCGCACC-AACTTACGC--TTTGATGTCCAGCATTCATTATTT 9239 | | ||| | || | | | || || || || || | | || || || | || Sbjct 202951 TCTGAACATCTTTATTGGAGAGCCTAATTTTGGCAAATTAA---CTAGTATGCACTTTTA 202895 Query 9240 AACTTGGAAAATGGGTTTAAAAACAGGCATGTACTATTTGCGCACAAAACCCGCCGCTGA 9299 |||| ||| |||||| || || || ||||| ||| | ||||| || || | || Sbjct 202894 TGGTTGGCAAAAGGGTTTGAAGACTGGTATGTATTATCTTCGCACTCGCCCTGCTGTCGA 202835 Query 9300 ACCTATCAAATTTACAGT 9317 | ||||||||||| || Sbjct 202834 TGCCATCAAATTTACCGT 202817 >seq802 Length=2293163 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 9089 TTAAAGAG-CTGTATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGATCGGCATGGCT 9147 ||||| || || || || || || ||||| || || |||| | |||| ||||||| Sbjct 2025239 TTAAAAAGGCTCTACAAGACGGTCTGGGAGATCTCTCAGCGCACCATCATCGACATGGCT 2025180 Query 9148 GCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGCACCA 9207 || ||||||| || |||||||| ||| || ||| | ||| ||||| || | ||| Sbjct 2025179 GCTGATAGAGCTGCGTTTATTGACCAGTCGCAGTCTATGAACTTGTTCTCTGCTGAACCC 2025120 Query 9208 ACTTACGCTTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGC 9267 | |||| | | | | ||| |||| | | ||||||| ||| || || || ||| Sbjct 2025119 AACTACGGTAAGCTCACGTCCATGCATTTCTACGCCTGGAAAAAGGGATTGAAGACGGGC 2025060 Query 9268 ATGTACTATTTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTACAGT 9317 ||||| ||| | || ||| ||| |||| || | ||||||||||| || Sbjct 2025059 ATGTATTATCTTCGATCAAGACCTGCCGTCGATGCCATCAAATTTACTGT 2025010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505299613565240